Cui L - Search Results

1

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW. Leebens-Mack J, et al. Among authors: cui l. Mol Biol Evol. 2005 Oct;22(10):1948-63. doi: 10.1093/molbev/msi191. Epub 2005 Jun 8. Mol Biol Evol. 2005. PMID: 15944438

2

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.

Duarte JM, Cui L, Wall PK, Zhang Q, Zhang X, Leebens-Mack J, Ma H, Altman N, dePamphilis CW. Duarte JM, et al. Among authors: cui l. Mol Biol Evol. 2006 Feb;23(2):469-78. doi: 10.1093/molbev/msj051. Epub 2005 Nov 9. Mol Biol Evol. 2006. PMID: 16280546

3

ChloroplastDB: the Chloroplast Genome Database.

Cui L, Veeraraghavan N, Richter A, Wall K, Jansen RK, Leebens-Mack J, Makalowska I, dePamphilis CW. Cui L, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D692-6. doi: 10.1093/nar/gkj055. Nucleic Acids Res. 2006. PMID: 16381961 Free PMC article.

4

Methods for obtaining and analyzing whole chloroplast genome sequences.

Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L. Jansen RK, et al. Among authors: cui l. Methods Enzymol. 2005;395:348-84. doi: 10.1016/S0076-6879(05)95020-9. Methods Enzymol. 2005. PMID: 15865976

5

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach.

Cui L, Leebens-Mack J, Wang LS, Tang J, Rymarquis L, Stern DB, dePamphilis CW. Cui L, et al. BMC Evol Biol. 2006 Feb 9;6:13. doi: 10.1186/1471-2148-6-13. BMC Evol Biol. 2006. PMID: 16469102 Free PMC article.

6

Widespread genome duplications throughout the history of flowering plants.

Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA, Ma H, dePamphilis CW. Cui L, et al. Genome Res. 2006 Jun;16(6):738-49. doi: 10.1101/gr.4825606. Epub 2006 May 15. Genome Res. 2006. PMID: 16702410 Free PMC article.

7

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat.

Yue F, Cui L, dePamphilis CW, Moret BM, Tang J. Yue F, et al. Among authors: cui l. BMC Genomics. 2008;9 Suppl 1(Suppl 1):S25. doi: 10.1186/1471-2164-9-S1-S25. BMC Genomics. 2008. PMID: 18366615 Free PMC article.

8

EST clustering error evaluation and correction.

Wang JP, Lindsay BG, Leebens-Mack J, Cui L, Wall K, Miller WC, dePamphilis CW. Wang JP, et al. Among authors: cui l. Bioinformatics. 2004 Nov 22;20(17):2973-84. doi: 10.1093/bioinformatics/bth342. Epub 2004 Jun 9. Bioinformatics. 2004. PMID: 15189818

9

The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats.

Maul JE, Lilly JW, Cui L, dePamphilis CW, Miller W, Harris EH, Stern DB. Maul JE, et al. Among authors: cui l. Plant Cell. 2002 Nov;14(11):2659-79. doi: 10.1105/tpc.006155. Plant Cell. 2002. PMID: 12417694 Free PMC article.

10

Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries.

Wang JP, Lindsay BG, Cui L, Wall PK, Marion J, Zhang J, dePamphilis CW. Wang JP, et al. Among authors: cui l. BMC Bioinformatics. 2005 Dec 13;6:300. doi: 10.1186/1471-2105-6-300. BMC Bioinformatics. 2005. PMID: 16351717 Free PMC article.

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