Roger AJ - Search Results

1

libcov: a C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny.

Butt D, Roger AJ, Blouin C. Butt D, et al. Among authors: roger aj. BMC Bioinformatics. 2005 Jun 6;6:138. doi: 10.1186/1471-2105-6-138. BMC Bioinformatics. 2005. PMID: 15938750 Free PMC article.

2

Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity.

Inagaki Y, Blouin C, Doolittle WF, Roger AJ. Inagaki Y, et al. Among authors: roger aj. Nucleic Acids Res. 2002 Jan 15;30(2):532-44. doi: 10.1093/nar/30.2.532. Nucleic Acids Res. 2002. PMID: 11788716 Free PMC article.

3

Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information.

Blouin C, Boucher Y, Roger AJ. Blouin C, et al. Among authors: roger aj. Nucleic Acids Res. 2003 Jan 15;31(2):790-7. doi: 10.1093/nar/gkg151. Nucleic Acids Res. 2003. PMID: 12527789 Free PMC article.

4

Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria.

Inagaki Y, Blouin C, Susko E, Roger AJ. Inagaki Y, et al. Among authors: roger aj. Nucleic Acids Res. 2003 Jul 15;31(14):4227-37. doi: 10.1093/nar/gkg440. Nucleic Acids Res. 2003. PMID: 12853641 Free PMC article.

5

Estimation of rates-across-sites distributions in phylogenetic substitution models.

Susko E, Field C, Blouin C, Roger AJ. Susko E, et al. Among authors: roger aj. Syst Biol. 2003 Oct;52(5):594-603. doi: 10.1080/10635150390235395. Syst Biol. 2003. PMID: 14530128

6

Rapid evolution in conformational space: a study of loop regions in a ubiquitous GTP binding domain.

Blouin C, Butt D, Roger AJ. Blouin C, et al. Among authors: roger aj. Protein Sci. 2004 Mar;13(3):608-16. doi: 10.1110/ps.03299804. Protein Sci. 2004. PMID: 14978301 Free PMC article.

7

Impact of taxon sampling on the estimation of rates of evolution at sites.

Blouin C, Butt D, Roger AJ. Blouin C, et al. Among authors: roger aj. Mol Biol Evol. 2005 Mar;22(3):784-91. doi: 10.1093/molbev/msi065. Epub 2004 Dec 8. Mol Biol Evol. 2005. PMID: 15590908

8

Biases in phylogenetic estimation can be caused by random sequence segments.

Susko E, Spencer M, Roger AJ. Susko E, et al. Among authors: roger aj. J Mol Evol. 2005 Sep;61(3):351-9. doi: 10.1007/s00239-004-0352-9. Epub 2005 Jul 21. J Mol Evol. 2005. PMID: 16044245

9

Using confidence set heuristics during topology search improves the robustness of phylogenetic inference.

Pepke SL, Butt D, Nadeau I, Roger AJ, Blouin C. Pepke SL, et al. Among authors: roger aj. J Mol Evol. 2007 Jan;64(1):80-9. doi: 10.1007/s00239-006-0072-4. Epub 2006 Dec 9. J Mol Evol. 2007. PMID: 17160642

10

A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny.

Wang HC, Li K, Susko E, Roger AJ. Wang HC, et al. Among authors: roger aj. BMC Evol Biol. 2008 Dec 16;8:331. doi: 10.1186/1471-2148-8-331. BMC Evol Biol. 2008. PMID: 19087270 Free PMC article.

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