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Page 1
Mining for regulatory programs in the cancer transcriptome.
Rhodes DR, Kalyana-Sundaram S, Mahavisno V, Barrette TR, Ghosh D, Chinnaiyan AM. Rhodes DR, et al. Among authors: mahavisno v. Nat Genet. 2005 Jun;37(6):579-83. doi: 10.1038/ng1578. Nat Genet. 2005. PMID: 15920519
Probabilistic model of the human protein-protein interaction network.
Rhodes DR, Tomlins SA, Varambally S, Mahavisno V, Barrette T, Kalyana-Sundaram S, Ghosh D, Pandey A, Chinnaiyan AM. Rhodes DR, et al. Among authors: mahavisno v. Nat Biotechnol. 2005 Aug;23(8):951-9. doi: 10.1038/nbt1103. Nat Biotechnol. 2005. PMID: 16082366
Molecular concepts analysis links tumors, pathways, mechanisms, and drugs.
Rhodes DR, Kalyana-Sundaram S, Tomlins SA, Mahavisno V, Kasper N, Varambally R, Barrette TR, Ghosh D, Varambally S, Chinnaiyan AM. Rhodes DR, et al. Among authors: mahavisno v. Neoplasia. 2007 May;9(5):443-54. doi: 10.1593/neo.07292. Neoplasia. 2007. PMID: 17534450 Free PMC article.
ConceptGen: a gene set enrichment and gene set relation mapping tool.
Sartor MA, Mahavisno V, Keshamouni VG, Cavalcoli J, Wright Z, Karnovsky A, Kuick R, Jagadish HV, Mirel B, Weymouth T, Athey B, Omenn GS. Sartor MA, et al. Among authors: mahavisno v. Bioinformatics. 2010 Feb 15;26(4):456-63. doi: 10.1093/bioinformatics/btp683. Epub 2009 Dec 9. Bioinformatics. 2010. PMID: 20007254 Free PMC article.
Michigan molecular interactions r2: from interacting proteins to pathways.
Tarcea VG, Weymouth T, Ade A, Bookvich A, Gao J, Mahavisno V, Wright Z, Chapman A, Jayapandian M, Ozgür A, Tian Y, Cavalcoli J, Mirel B, Patel J, Radev D, Athey B, States D, Jagadish HV. Tarcea VG, et al. Among authors: mahavisno v. Nucleic Acids Res. 2009 Jan;37(Database issue):D642-6. doi: 10.1093/nar/gkn722. Epub 2008 Oct 31. Nucleic Acids Res. 2009. PMID: 18978014 Free PMC article.