Nielsen ML - Search Results

1

New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques.

Savitski MM, Nielsen ML, Zubarev RA. Savitski MM, et al. Among authors: nielsen ml. Mol Cell Proteomics. 2005 Aug;4(8):1180-8. doi: 10.1074/mcp.T500009-MCP200. Epub 2005 May 22. Mol Cell Proteomics. 2005. PMID: 15911534 Free article.

2

Proteomics-grade de novo sequencing approach.

Savitski MM, Nielsen ML, Kjeldsen F, Zubarev RA. Savitski MM, et al. Among authors: nielsen ml. J Proteome Res. 2005 Nov-Dec;4(6):2348-54. doi: 10.1021/pr050288x. J Proteome Res. 2005. PMID: 16335984

3

ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures.

Savitski MM, Nielsen ML, Zubarev RA. Savitski MM, et al. Among authors: nielsen ml. Mol Cell Proteomics. 2006 May;5(5):935-48. doi: 10.1074/mcp.T500034-MCP200. Epub 2006 Jan 25. Mol Cell Proteomics. 2006. PMID: 16439352 Free article.

4

Extent of modifications in human proteome samples and their effect on dynamic range of analysis in shotgun proteomics.

Nielsen ML, Savitski MM, Zubarev RA. Nielsen ML, et al. Mol Cell Proteomics. 2006 Dec;5(12):2384-91. doi: 10.1074/mcp.M600248-MCP200. Epub 2006 Oct 2. Mol Cell Proteomics. 2006. PMID: 17015437 Free article.

5

Hydrogen rearrangement to and from radical z fragments in electron capture dissociation of peptides.

Savitski MM, Kjeldsen F, Nielsen ML, Zubarev RA. Savitski MM, et al. Among authors: nielsen ml. J Am Soc Mass Spectrom. 2007 Jan;18(1):113-20. doi: 10.1016/j.jasms.2006.09.008. Epub 2006 Oct 23. J Am Soc Mass Spectrom. 2007. PMID: 17059886 Free article.

6

SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides.

Fälth M, Savitski MM, Nielsen ML, Kjeldsen F, Andren PE, Zubarev RA. Fälth M, et al. Among authors: nielsen ml. J Proteome Res. 2007 Oct;6(10):4063-7. doi: 10.1021/pr070345h. Epub 2007 Aug 21. J Proteome Res. 2007. PMID: 17711326

7

Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry.

Nielsen ML, Savitski MM, Zubarev RA. Nielsen ML, et al. Mol Cell Proteomics. 2005 Jun;4(6):835-45. doi: 10.1074/mcp.T400022-MCP200. Epub 2005 Mar 16. Mol Cell Proteomics. 2005. PMID: 15772112 Free article.

8

PhosTShunter: a fast and reliable tool to detect phosphorylated peptides in liquid chromatography Fourier transform tandem mass spectrometry data sets.

Köcher T, Savitski MM, Nielsen ML, Zubarev RA. Köcher T, et al. Among authors: nielsen ml. J Proteome Res. 2006 Mar;5(3):659-68. doi: 10.1021/pr0503836. J Proteome Res. 2006. PMID: 16512682

9

Complementary sequence preferences of electron-capture dissociation and vibrational excitation in fragmentation of polypeptide polycations.

Savitski MM, Kjeldsen F, Nielsen ML, Zubarev RA. Savitski MM, et al. Among authors: nielsen ml. Angew Chem Int Ed Engl. 2006 Aug 11;45(32):5301-3. doi: 10.1002/anie.200601240. Angew Chem Int Ed Engl. 2006. PMID: 16847865 No abstract available.

10

De novo peptide sequencing and identification with precision mass spectrometry.

Frank AM, Savitski MM, Nielsen ML, Zubarev RA, Pevzner PA. Frank AM, et al. Among authors: nielsen ml. J Proteome Res. 2007 Jan;6(1):114-23. doi: 10.1021/pr060271u. J Proteome Res. 2007. PMID: 17203955 Free PMC article.

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