Singan VR - Search Results

1

Colbourne JK, Singan VR, Gilbert DG. Colbourne JK, et al. Among authors: singan vr. BMC Bioinformatics. 2005 Mar 7;6:45. doi: 10.1186/1471-2105-6-45. BMC Bioinformatics. 2005. PMID: 15752432 Free PMC article.

2

Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images.

Singan VR, Jones TR, Curran KM, Simpson JC. Singan VR, et al. BMC Bioinformatics. 2011 Oct 21;12:407. doi: 10.1186/1471-2105-12-407. BMC Bioinformatics. 2011. PMID: 22017789 Free PMC article.

3

A method for improved clustering and classification of microscopy images using quantitative co-localization coefficients.

Singan VR, Handzic K, Curran KM, Simpson JC. Singan VR, et al. BMC Res Notes. 2012 Jun 8;5:281. doi: 10.1186/1756-0500-5-281. BMC Res Notes. 2012. PMID: 22681635 Free PMC article.

4

Implementation of the Rank-Weighted Co-localization (RWC) algorithm in multiple image analysis platforms for quantitative analysis of microscopy images.

Singan VR, Simpson JC. Singan VR, et al. Source Code Biol Med. 2016 Feb 16;11:2. doi: 10.1186/s13029-016-0048-8. eCollection 2016. Source Code Biol Med. 2016. PMID: 26884809 Free PMC article.

5

Quantitative image analysis approaches for probing Rab GTPase localization and function in mammalian cells.

Singan VR, Handzic K, Simpson JC. Singan VR, et al. Biochem Soc Trans. 2012 Dec 1;40(6):1389-93. doi: 10.1042/BST20120145. Biochem Soc Trans. 2012. PMID: 23176486 Review.

6

Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway.

Simpson JC, Joggerst B, Laketa V, Verissimo F, Cetin C, Erfle H, Bexiga MG, Singan VR, Hériché JK, Neumann B, Mateos A, Blake J, Bechtel S, Benes V, Wiemann S, Ellenberg J, Pepperkok R. Simpson JC, et al. Among authors: singan vr. Nat Cell Biol. 2012 Jun 3;14(7):764-74. doi: 10.1038/ncb2510. Nat Cell Biol. 2012. PMID: 22660414

7

Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells.

Stadler C, Rexhepaj E, Singan VR, Murphy RF, Pepperkok R, Uhlén M, Simpson JC, Lundberg E. Stadler C, et al. Among authors: singan vr. Nat Methods. 2013 Apr;10(4):315-23. doi: 10.1038/nmeth.2377. Epub 2013 Feb 24. Nat Methods. 2013. PMID: 23435261

8

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.

Castanera R, Pérez G, López-Varas L, Amselem J, LaButti K, Singan V, Lipzen A, Haridas S, Barry K, Grigoriev IV, Pisabarro AG, Ramírez L. Castanera R, et al. BMC Genomics. 2017 Nov 16;18(1):883. doi: 10.1186/s12864-017-4243-z. BMC Genomics. 2017. PMID: 29145801 Free PMC article.

9

The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds.

Kowalczyk JE, Peng M, Pawlowski M, Lipzen A, Ng V, Singan V, Wang M, Grigoriev IV, Mäkelä MR. Kowalczyk JE, et al. Front Bioeng Biotechnol. 2019 Sep 20;7:229. doi: 10.3389/fbioe.2019.00229. eCollection 2019. Front Bioeng Biotechnol. 2019. PMID: 31616664 Free PMC article.

10

Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas.

Fochi V, Chitarra W, Kohler A, Voyron S, Singan VR, Lindquist EA, Barry KW, Girlanda M, Grigoriev IV, Martin F, Balestrini R, Perotto S. Fochi V, et al. Among authors: singan vr. New Phytol. 2017 Jan;213(1):365-379. doi: 10.1111/nph.14279. Epub 2016 Nov 11. New Phytol. 2017. PMID: 27859287 Free article.

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