Ondrechen MJ - Search Results

1

Active site prediction for comparative model structures with thematics.

Shehadi IA, Abyzov A, Uzun A, Wei Y, Murga LF, Ilyin V, Ondrechen MJ. Shehadi IA, et al. Among authors: ondrechen mj. J Bioinform Comput Biol. 2005 Feb;3(1):127-43. doi: 10.1142/s0219720005000916. J Bioinform Comput Biol. 2005. PMID: 15751116

2

Future directions in protein function prediction.

Shehadi IA, Yang H, Ondrechen MJ. Shehadi IA, et al. Among authors: ondrechen mj. Mol Biol Rep. 2002 Dec;29(4):329-35. doi: 10.1023/a:1021220208562. Mol Biol Rep. 2002. PMID: 12549818

3

Prediction of active sites for protein structures from computed chemical properties.

Ko J, Murga LF, Wei Y, Ondrechen MJ. Ko J, et al. Among authors: ondrechen mj. Bioinformatics. 2005 Jun;21 Suppl 1:i258-65. doi: 10.1093/bioinformatics/bti1039. Bioinformatics. 2005. PMID: 15961465

4

Selective prediction of interaction sites in protein structures with THEMATICS.

Wei Y, Ko J, Murga LF, Ondrechen MJ. Wei Y, et al. Among authors: ondrechen mj. BMC Bioinformatics. 2007 Apr 9;8:119. doi: 10.1186/1471-2105-8-119. BMC Bioinformatics. 2007. PMID: 17419878 Free PMC article.

5

Partial order optimum likelihood (POOL): maximum likelihood prediction of protein active site residues using 3D Structure and sequence properties.

Tong W, Wei Y, Murga LF, Ondrechen MJ, Williams RJ. Tong W, et al. Among authors: ondrechen mj. PLoS Comput Biol. 2009 Jan;5(1):e1000266. doi: 10.1371/journal.pcbi.1000266. Epub 2009 Jan 16. PLoS Comput Biol. 2009. PMID: 19148270 Free PMC article.

6

Identification of functional subclasses in the DJ-1 superfamily proteins.

Wei Y, Ringe D, Wilson MA, Ondrechen MJ. Wei Y, et al. Among authors: ondrechen mj. PLoS Comput Biol. 2007 Jan 26;3(1):e10. doi: 10.1371/journal.pcbi.0030010. PLoS Comput Biol. 2007. PMID: 17257049 Free PMC article.

7

Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines.

Tong W, Williams RJ, Wei Y, Murga LF, Ko J, Ondrechen MJ. Tong W, et al. Among authors: ondrechen mj. Protein Sci. 2008 Feb;17(2):333-41. doi: 10.1110/ps.073213608. Epub 2007 Dec 20. Protein Sci. 2008. PMID: 18096640 Free PMC article.

8

Prediction of interaction sites from apo 3D structures when the holo conformation is different.

Murga LF, Ondrechen MJ, Ringe D. Murga LF, et al. Among authors: ondrechen mj. Proteins. 2008 Aug 15;72(3):980-92. doi: 10.1002/prot.21995. Proteins. 2008. PMID: 18300225

9

Computed protonation properties: unique capabilities for protein functional site prediction.

Murga LF, Wei Y, Ondrechen MJ. Murga LF, et al. Among authors: ondrechen mj. Genome Inform. 2007;19:107-18. Genome Inform. 2007. PMID: 18546509

10

Statistical criteria for the identification of protein active sites using Theoretical Microscopic Titration Curves.

Ko J, Murga LF, André P, Yang H, Ondrechen MJ, Williams RJ, Agunwamba A, Budil DE. Ko J, et al. Among authors: ondrechen mj. Proteins. 2005 May 1;59(2):183-95. doi: 10.1002/prot.20418. Proteins. 2005. PMID: 15739204

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