Redfern O - Search Results

1

Survey of current protein family databases and their application in comparative, structural and functional genomics.

Redfern O, Grant A, Maibaum M, Orengo C. Redfern O, et al. J Chromatogr B Analyt Technol Biomed Life Sci. 2005 Feb 5;815(1-2):97-107. doi: 10.1016/j.jchromb.2004.11.010. J Chromatogr B Analyt Technol Biomed Life Sci. 2005. PMID: 15652801 Review.

2

Exploiting structural classifications for function prediction: towards a domain grammar for protein function.

Dessailly BH, Redfern OC, Cuff A, Orengo CA. Dessailly BH, et al. Curr Opin Struct Biol. 2009 Jun;19(3):349-56. doi: 10.1016/j.sbi.2009.03.009. Epub 2009 Apr 22. Curr Opin Struct Biol. 2009. PMID: 19398323 Free PMC article. Review.

3

A fast and automated solution for accurately resolving protein domain architectures.

Yeats C, Redfern OC, Orengo C. Yeats C, et al. Bioinformatics. 2010 Mar 15;26(6):745-51. doi: 10.1093/bioinformatics/btq034. Epub 2010 Jan 29. Bioinformatics. 2010. PMID: 20118117

4

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.

Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C. Pearl F, et al. Among authors: redfern o. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51. doi: 10.1093/nar/gki024. Nucleic Acids Res. 2005. PMID: 15608188 Free PMC article.

5

Exploiting protein structure data to explore the evolution of protein function and biological complexity.

Marsden RL, Ranea JA, Sillero A, Redfern O, Yeats C, Maibaum M, Lee D, Addou S, Reeves GA, Dallman TJ, Orengo CA. Marsden RL, et al. Among authors: redfern o. Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):425-40. doi: 10.1098/rstb.2005.1801. Philos Trans R Soc Lond B Biol Sci. 2006. PMID: 16524831 Free PMC article. Review.

6

Predicting protein function from sequence and structure.

Lee D, Redfern O, Orengo C. Lee D, et al. Among authors: redfern o. Nat Rev Mol Cell Biol. 2007 Dec;8(12):995-1005. doi: 10.1038/nrm2281. Nat Rev Mol Cell Biol. 2007. PMID: 18037900 Review.

7

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

Redfern OC, Harrison A, Dallman T, Pearl FM, Orengo CA. Redfern OC, et al. PLoS Comput Biol. 2007 Nov;3(11):e232. doi: 10.1371/journal.pcbi.0030232. PLoS Comput Biol. 2007. PMID: 18052539 Free PMC article.

8

Exploring the structure and function paradigm.

Redfern OC, Dessailly B, Orengo CA. Redfern OC, et al. Curr Opin Struct Biol. 2008 Jun;18(3):394-402. doi: 10.1016/j.sbi.2008.05.007. Curr Opin Struct Biol. 2008. PMID: 18554899 Free PMC article. Review.

9

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

Cuff AL, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton J, Orengo CA. Cuff AL, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D310-4. doi: 10.1093/nar/gkn877. Epub 2008 Nov 7. Nucleic Acids Res. 2009. PMID: 18996897 Free PMC article.

10

The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space.

Cuff A, Redfern OC, Greene L, Sillitoe I, Lewis T, Dibley M, Reid A, Pearl F, Dallman T, Todd A, Garratt R, Thornton J, Orengo C. Cuff A, et al. Structure. 2009 Aug 12;17(8):1051-62. doi: 10.1016/j.str.2009.06.015. Structure. 2009. PMID: 19679085 Free PMC article.

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