Yli-Harja O - Search Results

1

CGH-Plotter: MATLAB toolbox for CGH-data analysis.

Autio R, Hautaniemi S, Kauraniemi P, Yli-Harja O, Astola J, Wolf M, Kallioniemi A. Autio R, et al. Bioinformatics. 2003 Sep 1;19(13):1714-5. doi: 10.1093/bioinformatics/btg230. Bioinformatics. 2003. PMID: 15593402

2

A novel strategy for microarray quality control using Bayesian networks.

Hautaniemi S, Edgren H, Vesanen P, Wolf M, Järvinen AK, Yli-Harja O, Astola J, Kallioniemi O, Monni O. Hautaniemi S, et al. Bioinformatics. 2003 Nov 1;19(16):2031-8. doi: 10.1093/bioinformatics/btg275. Bioinformatics. 2003. PMID: 14594707

3

Simulation tools for biochemical networks: evaluation of performance and usability.

Pettinen A, Aho T, Smolander OP, Manninen T, Saarinen A, Taattola KL, Yli-Harja O, Linne ML. Pettinen A, et al. Bioinformatics. 2005 Feb 1;21(3):357-63. doi: 10.1093/bioinformatics/bti018. Epub 2004 Sep 9. Bioinformatics. 2005. PMID: 15358616

4

In silico microdissection of microarray data from heterogeneous cell populations.

Lähdesmäki H, Shmulevich L, Dunmire V, Yli-Harja O, Zhang W. Lähdesmäki H, et al. BMC Bioinformatics. 2005 Mar 14;6:54. doi: 10.1186/1471-2105-6-54. BMC Bioinformatics. 2005. PMID: 15766384 Free PMC article.

5

Robust detection of periodic time series measured from biological systems.

Ahdesmäki M, Lähdesmäki H, Pearson R, Huttunen H, Yli-Harja O. Ahdesmäki M, et al. BMC Bioinformatics. 2005 May 13;6:117. doi: 10.1186/1471-2105-6-117. BMC Bioinformatics. 2005. PMID: 15892890 Free PMC article.

6

Global gene expression profile of human cord blood-derived CD133+ cells.

Jaatinen T, Hemmoranta H, Hautaniemi S, Niemi J, Nicorici D, Laine J, Yli-Harja O, Partanen J. Jaatinen T, et al. Stem Cells. 2006 Mar;24(3):631-41. doi: 10.1634/stemcells.2005-0185. Epub 2005 Oct 6. Stem Cells. 2006. PMID: 16210406

7

Finding large domains of similarly expressed genes. A novel method using the MDL principle and the recursive segmentation procedure.

Nicorici D, Yli-Harja O, Astola J. Nicorici D, et al. IEEE Eng Med Biol Mag. 2006 Jan-Feb;25(1):82-9. doi: 10.1109/memb.2006.1578667. IEEE Eng Med Biol Mag. 2006. PMID: 16485395 No abstract available.

8

Simulation of microarray data with realistic characteristics.

Nykter M, Aho T, Ahdesmäki M, Ruusuvuori P, Lehmussola A, Yli-Harja O. Nykter M, et al. BMC Bioinformatics. 2006 Jul 18;7:349. doi: 10.1186/1471-2105-7-349. BMC Bioinformatics. 2006. PMID: 16848902 Free PMC article.

9

Differential gene expression in non-malignant tumour microenvironment is associated with outcome in follicular lymphoma patients treated with rituximab and CHOP.

Harjunpää A, Taskinen M, Nykter M, Karjalainen-Lindsberg ML, Nyman H, Monni O, Hemmer S, Yli-Harja O, Hautaniemi S, Meri S, Leppä S. Harjunpää A, et al. Br J Haematol. 2006 Oct;135(1):33-42. doi: 10.1111/j.1365-2141.2006.06255.x. Epub 2006 Aug 22. Br J Haematol. 2006. PMID: 16925574 Free article.

10

Evaluating the performance of microarray segmentation algorithms.

Lehmussola A, Ruusuvuori P, Yli-Harja O. Lehmussola A, et al. Bioinformatics. 2006 Dec 1;22(23):2910-7. doi: 10.1093/bioinformatics/btl502. Epub 2006 Oct 10. Bioinformatics. 2006. PMID: 17032673

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