Khodursky AB - Search Results

1

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli.

Jeong KS, Ahn J, Khodursky AB. Jeong KS, et al. Among authors: khodursky ab. Genome Biol. 2004;5(11):R86. doi: 10.1186/gb-2004-5-11-r86. Epub 2004 Oct 27. Genome Biol. 2004. PMID: 15535862 Free PMC article.

2

Analysis of pleiotropic transcriptional profiles: a case study of DNA gyrase inhibition.

Jeong KS, Xie Y, Hiasa H, Khodursky AB. Jeong KS, et al. Among authors: khodursky ab. PLoS Genet. 2006 Sep 29;2(9):e152. doi: 10.1371/journal.pgen.0020152. Epub 2006 Aug 2. PLoS Genet. 2006. PMID: 17009874 Free PMC article.

3

RecA can stimulate the relaxation activity of topoisomerase I: Molecular basis of topoisomerase-mediated genome-wide transcriptional responses in Escherichia coli.

Reckinger AR, Jeong KS, Khodursky AB, Hiasa H. Reckinger AR, et al. Among authors: khodursky ab. Nucleic Acids Res. 2007;35(1):79-86. doi: 10.1093/nar/gkl981. Epub 2006 Dec 6. Nucleic Acids Res. 2007. PMID: 17151069 Free PMC article.

4

Transient growth arrest in Escherichia coli induced by chromosome condensation.

Edwards AL, Sangurdekar DP, Jeong KS, Khodursky AB, Rybenkov VV. Edwards AL, et al. Among authors: khodursky ab. PLoS One. 2013 Dec 23;8(12):e84027. doi: 10.1371/journal.pone.0084027. eCollection 2013. PLoS One. 2013. PMID: 24376785 Free PMC article.

5

Incorporating prior information via shrinkage: a combined analysis of genome-wide location data and gene expression data.

Xie Y, Pan W, Jeong KS, Khodursky A. Xie Y, et al. Stat Med. 2007 May 10;26(10):2258-75. doi: 10.1002/sim.2703. Stat Med. 2007. PMID: 16958153

6

A case study on choosing normalization methods and test statistics for two-channel microarray data.

Xie Y, Jeong KS, Pan W, Khodursky A, Carlin BP. Xie Y, et al. Comp Funct Genomics. 2004;5(5):432-44. doi: 10.1002/cfg.416. Comp Funct Genomics. 2004. PMID: 18629172 Free PMC article.

7

A Bayesian approach to joint modeling of protein-DNA binding, gene expression and sequence data.

Xie Y, Pan W, Jeong KS, Xiao G, Khodursky AB. Xie Y, et al. Among authors: khodursky ab. Stat Med. 2010 Feb 20;29(4):489-503. doi: 10.1002/sim.3815. Stat Med. 2010. PMID: 20049751 Free PMC article.

8

Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli.

Peter BJ, Arsuaga J, Breier AM, Khodursky AB, Brown PO, Cozzarelli NR. Peter BJ, et al. Among authors: khodursky ab. Genome Biol. 2004;5(11):R87. doi: 10.1186/gb-2004-5-11-r87. Epub 2004 Nov 1. Genome Biol. 2004. PMID: 15535863 Free PMC article.

9

Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations.

Zare H, Sangurdekar D, Srivastava P, Kaveh M, Khodursky A. Zare H, et al. BMC Syst Biol. 2009 Apr 14;3:39. doi: 10.1186/1752-0509-3-39. BMC Syst Biol. 2009. PMID: 19366454 Free PMC article.

10

A classification based framework for quantitative description of large-scale microarray data.

Sangurdekar DP, Srienc F, Khodursky AB. Sangurdekar DP, et al. Among authors: khodursky ab. Genome Biol. 2006;7(4):R32. doi: 10.1186/gb-2006-7-4-r32. Epub 2006 Apr 20. Genome Biol. 2006. PMID: 16626502 Free PMC article.

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