Nakagawa N - Search Results

1

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.

Kimura S, Ide K, Kashihara A, Kano M, Hatakeyama M, Masui R, Nakagawa N, Yokoyama S, Kuramitsu S, Konagaya A. Kimura S, et al. Among authors: nakagawa n. Bioinformatics. 2005 Apr 1;21(7):1154-63. doi: 10.1093/bioinformatics/bti071. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15514004

2

Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8.

Shinkai A, Kira S, Nakagawa N, Kashihara A, Kuramitsu S, Yokoyama S. Shinkai A, et al. Among authors: nakagawa n. J Bacteriol. 2007 May;189(10):3891-901. doi: 10.1128/JB.01739-06. Epub 2007 Mar 16. J Bacteriol. 2007. PMID: 17369302 Free PMC article.

3

ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8.

Seto A, Murayama K, Toyama M, Ebihara A, Nakagawa N, Kuramitsu S, Shirouzu M, Yokoyama S. Seto A, et al. Among authors: nakagawa n. Proteins. 2005 Jan 1;58(1):235-42. doi: 10.1002/prot.20276. Proteins. 2005. PMID: 15526298

4

Crystallization and preliminary X-ray diffraction analysis of ribosomal protein L11 methyltransferase from Thermus thermophilus HB8.

Kaminishi T, Sakai H, Takemoto-Hori C, Terada T, Nakagawa N, Maoka N, Kuramitsu S, Shirouzu M, Yokoyama S. Kaminishi T, et al. Among authors: nakagawa n. Acta Crystallogr D Biol Crystallogr. 2003 May;59(Pt 5):930-2. doi: 10.1107/s0907444903004554. Epub 2003 Apr 25. Acta Crystallogr D Biol Crystallogr. 2003. PMID: 12777815

5

Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative.

Tanaka Y, Nakagawa N, Kuramitsu S, Yokoyama S, Masui R. Tanaka Y, et al. Among authors: nakagawa n. J Biochem. 2005 Sep;138(3):263-75. doi: 10.1093/jb/mvi120. J Biochem. 2005. PMID: 16169877

6

Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.

Pioszak AA, Murayama K, Nakagawa N, Ebihara A, Kuramitsu S, Shirouzu M, Yokoyama S. Pioszak AA, et al. Among authors: nakagawa n. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Oct 1;61(Pt 10):867-74. doi: 10.1107/S1744309105029842. Epub 2005 Sep 30. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005. PMID: 16511182 Free PMC article.

7

Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily.

Ishikawa H, Nakagawa N, Kuramitsu S, Masui R. Ishikawa H, et al. Among authors: nakagawa n. J Biochem. 2006 Oct;140(4):535-42. doi: 10.1093/jb/mvj183. Epub 2006 Aug 31. J Biochem. 2006. PMID: 16945939

8

Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis.

Kondo N, Nakagawa N, Ebihara A, Chen L, Liu ZJ, Wang BC, Yokoyama S, Kuramitsu S, Masui R. Kondo N, et al. Among authors: nakagawa n. Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):230-9. doi: 10.1107/S0907444906049262. Epub 2007 Jan 16. Acta Crystallogr D Biol Crystallogr. 2007. PMID: 17242516

9

Analysis of a nuclease activity of catalytic domain of Thermus thermophilus MutS2 by high-accuracy mass spectrometry.

Fukui K, Takahata Y, Nakagawa N, Kuramitsu S, Masui R. Fukui K, et al. Among authors: nakagawa n. Nucleic Acids Res. 2007;35(15):e100. doi: 10.1093/nar/gkm575. Epub 2007 Aug 7. Nucleic Acids Res. 2007. PMID: 17686785 Free PMC article.

10

Crystal structure of family 5 uracil-DNA glycosylase bound to DNA.

Kosaka H, Hoseki J, Nakagawa N, Kuramitsu S, Masui R. Kosaka H, et al. Among authors: nakagawa n. J Mol Biol. 2007 Nov 2;373(4):839-50. doi: 10.1016/j.jmb.2007.08.022. Epub 2007 Aug 21. J Mol Biol. 2007. PMID: 17870091

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