Therneau TM - Search Results

1

Normalization of two-channel microarray experiments: a semiparametric approach.

Eckel JE, Gennings C, Therneau TM, Burgoon LD, Boverhof DR, Zacharewski TR. Eckel JE, et al. Among authors: therneau tm. Bioinformatics. 2005 Apr 1;21(7):1078-83. doi: 10.1093/bioinformatics/bti105. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15513988

2

Faster cyclic loess: normalizing RNA arrays via linear models.

Ballman KV, Grill DE, Oberg AL, Therneau TM. Ballman KV, et al. Among authors: therneau tm. Bioinformatics. 2004 Nov 1;20(16):2778-86. doi: 10.1093/bioinformatics/bth327. Epub 2004 May 27. Bioinformatics. 2004. PMID: 15166021

3

Experimental design and analysis of antibody microarrays: applying methods from cDNA arrays.

Eckel-Passow JE, Hoering A, Therneau TM, Ghobrial I. Eckel-Passow JE, et al. Among authors: therneau tm. Cancer Res. 2005 Apr 15;65(8):2985-9. doi: 10.1158/0008-5472.CAN-04-3213. Cancer Res. 2005. PMID: 15833819 Review.

4

Joint estimation of calibration and expression for high-density oligonucleotide arrays.

Oberg AL, Mahoney DW, Ballman KV, Therneau TM. Oberg AL, et al. Among authors: therneau tm. Bioinformatics. 2006 Oct 1;22(19):2381-7. doi: 10.1093/bioinformatics/btl399. Epub 2006 Jul 28. Bioinformatics. 2006. PMID: 16877757

5

Regression analysis for comparing protein samples with 16O/18O stable-isotope labeled mass spectrometry.

Eckel-Passow JE, Oberg AL, Therneau TM, Mason CJ, Mahoney DW, Johnson KL, Olson JE, Bergen HR 3rd. Eckel-Passow JE, et al. Among authors: therneau tm. Bioinformatics. 2006 Nov 15;22(22):2739-45. doi: 10.1093/bioinformatics/btl464. Epub 2006 Sep 5. Bioinformatics. 2006. PMID: 16954138

6

Quantitating tissue specificity of human genes to facilitate biomarker discovery.

Vasmatzis G, Klee EW, Kube DM, Therneau TM, Kosari F. Vasmatzis G, et al. Among authors: therneau tm. Bioinformatics. 2007 Jun 1;23(11):1348-55. doi: 10.1093/bioinformatics/btm102. Epub 2007 Mar 23. Bioinformatics. 2007. PMID: 17384019

7

An insight into high-resolution mass-spectrometry data.

Eckel-Passow JE, Oberg AL, Therneau TM, Bergen HR 3rd. Eckel-Passow JE, et al. Among authors: therneau tm. Biostatistics. 2009 Jul;10(3):481-500. doi: 10.1093/biostatistics/kxp006. Epub 2009 Mar 26. Biostatistics. 2009. PMID: 19325168 Free PMC article.

8

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays.

Chai HS, Therneau TM, Bailey KR, Kocher JP. Chai HS, et al. Among authors: therneau tm. BMC Bioinformatics. 2010 Jun 29;11:356. doi: 10.1186/1471-2105-11-356. BMC Bioinformatics. 2010. PMID: 20587065 Free PMC article.

9

A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis.

Reese SE, Archer KJ, Therneau TM, Atkinson EJ, Vachon CM, de Andrade M, Kocher JP, Eckel-Passow JE. Reese SE, et al. Among authors: therneau tm. Bioinformatics. 2013 Nov 15;29(22):2877-83. doi: 10.1093/bioinformatics/btt480. Epub 2013 Aug 19. Bioinformatics. 2013. PMID: 23958724 Free PMC article.

10

BIMA V3: an aligner customized for mate pair library sequencing.

Drucker TM, Johnson SH, Murphy SJ, Cradic KW, Therneau TM, Vasmatzis G. Drucker TM, et al. Among authors: therneau tm. Bioinformatics. 2014 Jun 1;30(11):1627-9. doi: 10.1093/bioinformatics/btu078. Epub 2014 Feb 12. Bioinformatics. 2014. PMID: 24526710

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