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Page 1
Highly parallel SNP genotyping.
Fan JB, Oliphant A, Shen R, Kermani BG, Garcia F, Gunderson KL, Hansen M, Steemers F, Butler SL, Deloukas P, Galver L, Hunt S, McBride C, Bibikova M, Rubano T, Chen J, Wickham E, Doucet D, Chang W, Campbell D, Zhang B, Kruglyak S, Bentley D, Haas J, Rigault P, Zhou L, Stuelpnagel J, Chee MS. Fan JB, et al. Among authors: kruglyak s. Cold Spring Harb Symp Quant Biol. 2003;68:69-78. doi: 10.1101/sqb.2003.68.69. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338605 No abstract available.
Decoding randomly ordered DNA arrays.
Gunderson KL, Kruglyak S, Graige MS, Garcia F, Kermani BG, Zhao C, Che D, Dickinson T, Wickham E, Bierle J, Doucet D, Milewski M, Yang R, Siegmund C, Haas J, Zhou L, Oliphant A, Fan JB, Barnard S, Chee MS. Gunderson KL, et al. Among authors: kruglyak s. Genome Res. 2004 May;14(5):870-7. doi: 10.1101/gr.2255804. Epub 2004 Apr 12. Genome Res. 2004. PMID: 15078854 Free PMC article.
Whole-genome haplotyping by dilution, amplification, and sequencing.
Kaper F, Swamy S, Klotzle B, Munchel S, Cottrell J, Bibikova M, Chuang HY, Kruglyak S, Ronaghi M, Eberle MA, Fan JB. Kaper F, et al. Among authors: kruglyak s. Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5552-7. doi: 10.1073/pnas.1218696110. Epub 2013 Mar 18. Proc Natl Acad Sci U S A. 2013. PMID: 23509297 Free PMC article.
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree.
Eberle MA, Fritzilas E, Krusche P, Källberg M, Moore BL, Bekritsky MA, Iqbal Z, Chuang HY, Humphray SJ, Halpern AL, Kruglyak S, Margulies EH, McVean G, Bentley DR. Eberle MA, et al. Among authors: kruglyak s. Genome Res. 2017 Jan;27(1):157-164. doi: 10.1101/gr.210500.116. Epub 2016 Nov 30. Genome Res. 2017. PMID: 27903644 Free PMC article.
A model of technical variation of microarray signals.
Chudin E, Kruglyak S, Baker SC, Oeser S, Barker D, McDaniel TK. Chudin E, et al. Among authors: kruglyak s. J Comput Biol. 2006 May;13(4):996-1003. doi: 10.1089/cmb.2006.13.996. J Comput Biol. 2006. PMID: 16761924
Compressing genomic sequence fragments using SlimGene.
Kozanitis C, Saunders C, Kruglyak S, Bafna V, Varghese G. Kozanitis C, et al. Among authors: kruglyak s. J Comput Biol. 2011 Mar;18(3):401-13. doi: 10.1089/cmb.2010.0253. J Comput Biol. 2011. PMID: 21385043 Free PMC article.
Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.
Raczy C, Petrovski R, Saunders CT, Chorny I, Kruglyak S, Margulies EH, Chuang HY, Källberg M, Kumar SA, Liao A, Little KM, Strömberg MP, Tanner SW. Raczy C, et al. Among authors: kruglyak s. Bioinformatics. 2013 Aug 15;29(16):2041-3. doi: 10.1093/bioinformatics/btt314. Epub 2013 Jun 4. Bioinformatics. 2013. PMID: 23736529
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.
Lee AY, Ewing AD, Ellrott K, Hu Y, Houlahan KE, Bare JC, Espiritu SMG, Huang V, Dang K, Chong Z, Caloian C, Yamaguchi TN; ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants; Kellen MR, Chen K, Norman TC, Friend SH, Guinney J, Stolovitzky G, Haussler D, Margolin AA, Stuart JM, Boutros PC. Lee AY, et al. Genome Biol. 2018 Nov 6;19(1):188. doi: 10.1186/s13059-018-1539-5. Genome Biol. 2018. PMID: 30400818 Free PMC article.
27 results