Lilien R - Search Results

1

A polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.

Langmead CJ, Yan A, Lilien R, Wang L, Donald BR. Langmead CJ, et al. Among authors: lilien r. J Comput Biol. 2004;11(2-3):277-98. doi: 10.1089/1066527041410436. J Comput Biol. 2004. PMID: 15285893

2

Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum.

Lilien RH, Farid H, Donald BR. Lilien RH, et al. J Comput Biol. 2003;10(6):925-46. doi: 10.1089/106652703322756159. J Comput Biol. 2003. PMID: 14980018

3

High-throughput inference of protein-protein interfaces from unassigned NMR data.

Mettu RR, Lilien RH, Donald BR. Mettu RR, et al. Among authors: lilien rh. Bioinformatics. 2005 Jun;21 Suppl 1:i292-301. doi: 10.1093/bioinformatics/bti1005. Bioinformatics. 2005. PMID: 15961470

4

A novel ensemble-based scoring and search algorithm for protein redesign and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.

Lilien RH, Stevens BW, Anderson AC, Donald BR. Lilien RH, et al. J Comput Biol. 2005 Jul-Aug;12(6):740-61. doi: 10.1089/cmb.2005.12.740. J Comput Biol. 2005. PMID: 16108714

5

A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry.

Lilien RH, Bailey-Kellogg C, Anderson AC, Donald BR. Lilien RH, et al. Acta Crystallogr D Biol Crystallogr. 2004 Jun;60(Pt 6):1057-67. doi: 10.1107/S090744490400695X. Epub 2004 May 21. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15159565

6

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: lilien rh. Bioinformatics. 2006 Jul 15;22(14):e174-83. doi: 10.1093/bioinformatics/btl220. Bioinformatics. 2006. PMID: 16873469

7

Redesigning the PheA domain of gramicidin synthetase leads to a new understanding of the enzyme's mechanism and selectivity.

Stevens BW, Lilien RH, Georgiev I, Donald BR, Anderson AC. Stevens BW, et al. Among authors: lilien rh. Biochemistry. 2006 Dec 26;45(51):15495-504. doi: 10.1021/bi061788m. Epub 2006 Dec 19. Biochemistry. 2006. PMID: 17176071

8

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: lilien rh. J Comput Chem. 2008 Jul 30;29(10):1527-42. doi: 10.1002/jcc.20909. J Comput Chem. 2008. PMID: 18293294 Free PMC article.

9

Phylogenetic classification of protozoa based on the structure of the linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate synthase.

O'Neil RH, Lilien RH, Donald BR, Stroud RM, Anderson AC. O'Neil RH, et al. Among authors: lilien rh. J Biol Chem. 2003 Dec 26;278(52):52980-7. doi: 10.1074/jbc.M310328200. Epub 2003 Oct 9. J Biol Chem. 2003. PMID: 14555647 Free article.

10

OSPREY: protein design with ensembles, flexibility, and provable algorithms.

Gainza P, Roberts KE, Georgiev I, Lilien RH, Keedy DA, Chen CY, Reza F, Anderson AC, Richardson DC, Richardson JS, Donald BR. Gainza P, et al. Among authors: lilien rh. Methods Enzymol. 2013;523:87-107. doi: 10.1016/B978-0-12-394292-0.00005-9. Methods Enzymol. 2013. PMID: 23422427 Free PMC article.

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