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Preprocessing of oligonucleotide array data.
Wu Z, Irizarry RA. Wu Z, et al. Among authors: irizarry ra. Nat Biotechnol. 2004 Jun;22(6):656-8; author reply 658. doi: 10.1038/nbt0604-656b. Nat Biotechnol. 2004. PMID: 15175677 No abstract available.
A benchmark for Affymetrix GeneChip expression measures.
Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP. Cope LM, et al. Among authors: irizarry ra. Bioinformatics. 2004 Feb 12;20(3):323-31. doi: 10.1093/bioinformatics/btg410. Bioinformatics. 2004. PMID: 14960458
Comparison of Affymetrix GeneChip expression measures.
Irizarry RA, Wu Z, Jaffee HA. Irizarry RA, et al. Bioinformatics. 2006 Apr 1;22(7):789-94. doi: 10.1093/bioinformatics/btk046. Epub 2006 Jan 12. Bioinformatics. 2006. PMID: 16410320
DNA hypomethylation arises later in prostate cancer progression than CpG island hypermethylation and contributes to metastatic tumor heterogeneity.
Yegnasubramanian S, Haffner MC, Zhang Y, Gurel B, Cornish TC, Wu Z, Irizarry RA, Morgan J, Hicks J, DeWeese TL, Isaacs WB, Bova GS, De Marzo AM, Nelson WG. Yegnasubramanian S, et al. Among authors: irizarry ra. Cancer Res. 2008 Nov 1;68(21):8954-67. doi: 10.1158/0008-5472.CAN-07-6088. Cancer Res. 2008. PMID: 18974140 Free PMC article.
Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences.
Yegnasubramanian S, Wu Z, Haffner MC, Esopi D, Aryee MJ, Badrinath R, He TL, Morgan JD, Carvalho B, Zheng Q, De Marzo AM, Irizarry RA, Nelson WG. Yegnasubramanian S, et al. Among authors: irizarry ra. BMC Genomics. 2011 Jun 13;12:313. doi: 10.1186/1471-2164-12-313. BMC Genomics. 2011. PMID: 21669002 Free PMC article.
184 results