Tolstorukov MY - Search Results

1

Protein-DNA hydrophobic recognition in the minor groove is facilitated by sugar switching.

Tolstorukov MY, Jernigan RL, Zhurkin VB. Tolstorukov MY, et al. J Mol Biol. 2004 Mar 12;337(1):65-76. doi: 10.1016/j.jmb.2004.01.011. J Mol Biol. 2004. PMID: 15001352

2

"Antiparallel" DNA loop in gal repressosome visualized by atomic force microscopy.

Virnik K, Lyubchenko YL, Karymov MA, Dahlgren P, Tolstorukov MY, Semsey S, Zhurkin VB, Adhya S. Virnik K, et al. Among authors: tolstorukov my. J Mol Biol. 2003 Nov 14;334(1):53-63. doi: 10.1016/j.jmb.2003.09.030. J Mol Biol. 2003. PMID: 14596799

3

A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning.

Tolstorukov MY, Colasanti AV, McCandlish DM, Olson WK, Zhurkin VB. Tolstorukov MY, et al. J Mol Biol. 2007 Aug 17;371(3):725-38. doi: 10.1016/j.jmb.2007.05.048. Epub 2007 May 24. J Mol Biol. 2007. PMID: 17585938 Free PMC article.

4

A mutant spacer sequence between -35 and -10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent.

Liu M, Tolstorukov M, Zhurkin V, Garges S, Adhya S. Liu M, et al. Proc Natl Acad Sci U S A. 2004 May 4;101(18):6911-6. doi: 10.1073/pnas.0401929101. Epub 2004 Apr 26. Proc Natl Acad Sci U S A. 2004. PMID: 15118087 Free PMC article.

5

A-tract clusters may facilitate DNA packaging in bacterial nucleoid.

Tolstorukov MY, Virnik KM, Adhya S, Zhurkin VB. Tolstorukov MY, et al. Nucleic Acids Res. 2005 Jul 15;33(12):3907-18. doi: 10.1093/nar/gki699. Print 2005. Nucleic Acids Res. 2005. PMID: 16024741 Free PMC article.

6

Organization of DNA in a bacterial nucleoid.

Tolstorukov MY, Virnik K, Zhurkin VB, Adhya S. Tolstorukov MY, et al. BMC Microbiol. 2016 Feb 20;16:22. doi: 10.1186/s12866-016-0637-3. BMC Microbiol. 2016. PMID: 26897370 Free PMC article.

7

nuScore: a web-interface for nucleosome positioning predictions.

Tolstorukov MY, Choudhary V, Olson WK, Zhurkin VB, Park PJ. Tolstorukov MY, et al. Bioinformatics. 2008 Jun 15;24(12):1456-8. doi: 10.1093/bioinformatics/btn212. Epub 2008 Apr 29. Bioinformatics. 2008. PMID: 18445607 Free PMC article.

8

Bioinformatic Analysis of Nucleosome and Histone Variant Positioning.

Mieczkowski J, Tolstorukov MY. Mieczkowski J, et al. Among authors: tolstorukov my. Methods Mol Biol. 2018;1832:185-203. doi: 10.1007/978-1-4939-8663-7_10. Methods Mol Biol. 2018. PMID: 30073528

9

Single-Assay Profiling of Nucleosome Occupancy and Chromatin Accessibility.

Cook A, Mieczkowski J, Tolstorukov MY. Cook A, et al. Among authors: tolstorukov my. Curr Protoc Mol Biol. 2017 Oct 2;120:21.34.1-21.34.18. doi: 10.1002/cpmb.45. Curr Protoc Mol Biol. 2017. PMID: 28967996

10

Nucleosome positioning in human HOX gene clusters.

Kharchenko PV, Woo CJ, Tolstorukov MY, Kingston RE, Park PJ. Kharchenko PV, et al. Among authors: tolstorukov my. Genome Res. 2008 Oct;18(10):1554-61. doi: 10.1101/gr.075952.107. Epub 2008 Aug 22. Genome Res. 2008. PMID: 18723689 Free PMC article.

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