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PIRSF: family classification system at the Protein Information Resource.
Wu CH, Nikolskaya A, Huang H, Yeh LS, Natale DA, Vinayaka CR, Hu ZZ, Mazumder R, Kumar S, Kourtesis P, Ledley RS, Suzek BE, Arminski L, Chen Y, Zhang J, Cardenas JL, Chung S, Castro-Alvear J, Dinkov G, Barker WC. Wu CH, et al. Among authors: natale da. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D112-4. doi: 10.1093/nar/gkh097. Nucleic Acids Res. 2004. PMID: 14681371 Free PMC article.
The COG database: an updated version includes eukaryotes.
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. Tatusov RL, et al. Among authors: natale da. BMC Bioinformatics. 2003 Sep 11;4:41. doi: 10.1186/1471-2105-4-41. Epub 2003 Sep 11. BMC Bioinformatics. 2003. PMID: 12969510 Free PMC article.
UniProt: the Universal Protein knowledgebase.
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. Apweiler R, et al. Among authors: natale da. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D115-9. doi: 10.1093/nar/gkh131. Nucleic Acids Res. 2004. PMID: 14681372 Free PMC article.
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. Koonin EV, et al. Among authors: natale da. Genome Biol. 2004;5(2):R7. doi: 10.1186/gb-2004-5-2-r7. Epub 2004 Jan 15. Genome Biol. 2004. PMID: 14759257 Free PMC article.
The Universal Protein Resource (UniProt).
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. Bairoch A, et al. Among authors: natale da. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D154-9. doi: 10.1093/nar/gki070. Nucleic Acids Res. 2005. PMID: 15608167 Free PMC article.
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, Suzek B. Wu CH, et al. Among authors: natale da. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D187-91. doi: 10.1093/nar/gkj161. Nucleic Acids Res. 2006. PMID: 16381842 Free PMC article.
Framework for a protein ontology.
Natale DA, Arighi CN, Barker WC, Blake J, Chang TC, Hu Z, Liu H, Smith B, Wu CH. Natale DA, et al. BMC Bioinformatics. 2007 Nov 27;8 Suppl 9(Suppl 9):S1. doi: 10.1186/1471-2105-8-S9-S1. BMC Bioinformatics. 2007. PMID: 18047702 Free PMC article.
The Universal Protein Resource (UniProt) 2009.
UniProt Consortium. UniProt Consortium. Nucleic Acids Res. 2009 Jan;37(Database issue):D169-74. doi: 10.1093/nar/gkn664. Epub 2008 Oct 4. Nucleic Acids Res. 2009. PMID: 18836194 Free PMC article.
84 results