Yu H - Search Results

1

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M. Jansen R, et al. Among authors: yu h. Science. 2003 Oct 17;302(5644):449-53. doi: 10.1126/science.1087361. Science. 2003. PMID: 14564010

2

TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics.

Yu H, Zhu X, Greenbaum D, Karro J, Gerstein M. Yu H, et al. Nucleic Acids Res. 2004 Jan 14;32(1):328-37. doi: 10.1093/nar/gkh164. Print 2004. Nucleic Acids Res. 2004. PMID: 14724320 Free PMC article.

3

Assessing the limits of genomic data integration for predicting protein networks.

Lu LJ, Xia Y, Paccanaro A, Yu H, Gerstein M. Lu LJ, et al. Among authors: yu h. Genome Res. 2005 Jul;15(7):945-53. doi: 10.1101/gr.3610305. Genome Res. 2005. PMID: 15998909 Free PMC article.

4

Predicting interactions in protein networks by completing defective cliques.

Yu H, Paccanaro A, Trifonov V, Gerstein M. Yu H, et al. Bioinformatics. 2006 Apr 1;22(7):823-9. doi: 10.1093/bioinformatics/btl014. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455753

5

Genomic analysis of the hierarchical structure of regulatory networks.

Yu H, Gerstein M. Yu H, et al. Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14724-31. doi: 10.1073/pnas.0508637103. Epub 2006 Sep 26. Proc Natl Acad Sci U S A. 2006. PMID: 17003135 Free PMC article.

6

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M. Borneman AR, et al. Among authors: yu h. Science. 2007 Aug 10;317(5839):815-9. doi: 10.1126/science.1140748. Science. 2007. PMID: 17690298

7

Identification and correction of spurious spatial correlations in microarray data.

Qian J, Kluger Y, Yu H, Gerstein M. Qian J, et al. Among authors: yu h. Biotechniques. 2003 Jul;35(1):42-4, 46, 48. doi: 10.2144/03351bm03. Biotechniques. 2003. PMID: 12866403 Free article. No abstract available.

8

Genomic analysis of gene expression relationships in transcriptional regulatory networks.

Yu H, Luscombe NM, Qian J, Gerstein M. Yu H, et al. Trends Genet. 2003 Aug;19(8):422-7. doi: 10.1016/S0168-9525(03)00175-6. Trends Genet. 2003. PMID: 12902159

9

Relationship between gene co-expression and probe localization on microarray slides.

Kluger Y, Yu H, Qian J, Gerstein M. Kluger Y, et al. Among authors: yu h. BMC Genomics. 2003 Dec 10;4(1):49. doi: 10.1186/1471-2164-4-49. BMC Genomics. 2003. PMID: 14667251 Free PMC article.

10

Genomic analysis of essentiality within protein networks.

Yu H, Greenbaum D, Xin Lu H, Zhu X, Gerstein M. Yu H, et al. Trends Genet. 2004 Jun;20(6):227-31. doi: 10.1016/j.tig.2004.04.008. Trends Genet. 2004. PMID: 15145574 Review.

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