Emili A - Search Results

1

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M. Jansen R, et al. Among authors: emili a. Science. 2003 Oct 17;302(5644):449-53. doi: 10.1126/science.1087361. Science. 2003. PMID: 14564010

2

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

Khanna M, Van Bakel H, Tang X, Calarco JA, Babak T, Guo G, Emili A, Greenblatt JF, Hughes TR, Krogan NJ, Blencowe BJ. Khanna M, et al. Among authors: emili a. RNA. 2009 Dec;15(12):2174-85. doi: 10.1261/rna.1790509. Epub 2009 Sep 29. RNA. 2009. PMID: 19789211 Free PMC article.

3

The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion.

Baetz KK, Krogan NJ, Emili A, Greenblatt J, Hieter P. Baetz KK, et al. Among authors: emili a. Mol Cell Biol. 2004 Feb;24(3):1232-44. doi: 10.1128/MCB.24.3.1232-1244.2003. Mol Cell Biol. 2004. PMID: 14729968 Free PMC article.

4

Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone.

Zhao R, Davey M, Hsu YC, Kaplanek P, Tong A, Parsons AB, Krogan N, Cagney G, Mai D, Greenblatt J, Boone C, Emili A, Houry WA. Zhao R, et al. Among authors: emili a. Cell. 2005 Mar 11;120(5):715-27. doi: 10.1016/j.cell.2004.12.024. Cell. 2005. PMID: 15766533 Free article.

5

Systematic characterization of the protein interaction network and protein complexes in Saccharomyces cerevisiae using tandem affinity purification and mass spectrometry.

Babu M, Krogan NJ, Awrey DE, Emili A, Greenblatt JF. Babu M, et al. Among authors: emili a. Methods Mol Biol. 2009;548:187-207. doi: 10.1007/978-1-59745-540-4_11. Methods Mol Biol. 2009. PMID: 19521826

6

An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell.

Gong Y, Kakihara Y, Krogan N, Greenblatt J, Emili A, Zhang Z, Houry WA. Gong Y, et al. Among authors: emili a. Mol Syst Biol. 2009;5:275. doi: 10.1038/msb.2009.26. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536198 Free PMC article.

7

Extracting high confidence protein interactions from affinity purification data: at the crossroads.

Pu S, Vlasblom J, Turinsky A, Marcon E, Phanse S, Trimble SS, Olsen J, Greenblatt J, Emili A, Wodak SJ. Pu S, et al. Among authors: emili a. J Proteomics. 2015 Apr 6;118:63-80. doi: 10.1016/j.jprot.2015.03.009. Epub 2015 Mar 14. J Proteomics. 2015. PMID: 25782749

8

RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach.

Krogan NJ, Kim M, Ahn SH, Zhong G, Kobor MS, Cagney G, Emili A, Shilatifard A, Buratowski S, Greenblatt JF. Krogan NJ, et al. Among authors: emili a. Mol Cell Biol. 2002 Oct;22(20):6979-92. doi: 10.1128/MCB.22.20.6979-6992.2002. Mol Cell Biol. 2002. PMID: 12242279 Free PMC article.

9

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. Krogan NJ, et al. Among authors: emili a. Nature. 2006 Mar 30;440(7084):637-43. doi: 10.1038/nature04670. Epub 2006 Mar 22. Nature. 2006. PMID: 16554755

10

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs.

Pitre S, Dehne F, Chan A, Cheetham J, Duong A, Emili A, Gebbia M, Greenblatt J, Jessulat M, Krogan N, Luo X, Golshani A. Pitre S, et al. Among authors: emili a. BMC Bioinformatics. 2006 Jul 27;7:365. doi: 10.1186/1471-2105-7-365. BMC Bioinformatics. 2006. PMID: 16872538 Free PMC article.

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