Xu D - Search Results

1

A computational study of Shewanella oneidensis MR-1: structural prediction and functional inference of hypothetical proteins.

Yost C, Hauser L, Larimer F, Thompson D, Beliaev A, Zhou J, Xu Y, Xu D. Yost C, et al. Among authors: xu d, xu y. OMICS. 2003 Summer;7(2):177-91. doi: 10.1089/153623103322246575. OMICS. 2003. PMID: 14506847

2

Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees.

Xu Y, Olman V, Xu D. Xu Y, et al. Among authors: xu d. Bioinformatics. 2002 Apr;18(4):536-45. doi: 10.1093/bioinformatics/18.4.536. Bioinformatics. 2002. PMID: 12016051

3

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.

Xu D, Li G, Wu L, Zhou J, Xu Y. Xu D, et al. Among authors: xu y. Bioinformatics. 2002 Nov;18(11):1432-7. doi: 10.1093/bioinformatics/18.11.1432. Bioinformatics. 2002. PMID: 12424113

4

Improving the performance of DomainParser for structural domain partition using neural network.

Guo JT, Xu D, Kim D, Xu Y. Guo JT, et al. Among authors: xu d, xu y. Nucleic Acids Res. 2003 Feb 1;31(3):944-52. doi: 10.1093/nar/gkg189. Nucleic Acids Res. 2003. PMID: 12560490 Free PMC article.

5

Identification of regulatory binding sites using minimum spanning trees.

Olman V, Xu D, Xu Y. Olman V, et al. Among authors: xu d, xu y. Pac Symp Biocomput. 2003:327-38. Pac Symp Biocomput. 2003. PMID: 12603039 Free article.

6

Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling.

Heffelfinger GS, Martino A, Gorin A, Xu Y, Rintoul MD 3rd, Geist A, Al-Hashimi HM, Davidson GS, Faulon JL, Frink LJ, Haaland DM, Hart WE, Jakobsson E, Lane T, Li M, Locascio P, Olken F, Olman V, Palenik B, Plimpton SJ, Roe DC, Samatova NF, Shah M, Shoshoni A, Strauss CE, Thomas EV, Timlin JA, Xu D. Heffelfinger GS, et al. Among authors: xu d, xu y. OMICS. 2002;6(4):305-30. doi: 10.1089/153623102321112746. OMICS. 2002. PMID: 12626091 Free article.

7

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.

Liu Y, Zhou J, Omelchenko MV, Beliaev AS, Venkateswaran A, Stair J, Wu L, Thompson DK, Xu D, Rogozin IB, Gaidamakova EK, Zhai M, Makarova KS, Koonin EV, Daly MJ. Liu Y, et al. Among authors: xu d. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4191-6. doi: 10.1073/pnas.0630387100. Epub 2003 Mar 21. Proc Natl Acad Sci U S A. 2003. PMID: 12651953 Free PMC article.

8

Computational analyses of high-throughput protein-protein interaction data.

Chen Y, Xu D. Chen Y, et al. Among authors: xu d. Curr Protein Pept Sci. 2003 Jun;4(3):159-81. doi: 10.2174/1389203033487225. Curr Protein Pept Sci. 2003. PMID: 12769716 Review.

9

EXCAVATOR: a computer program for efficiently mining gene expression data.

Xu D, Olman V, Wang L, Xu Y. Xu D, et al. Among authors: xu y. Nucleic Acids Res. 2003 Oct 1;31(19):5582-9. doi: 10.1093/nar/gkg783. Nucleic Acids Res. 2003. PMID: 14500821 Free PMC article.

10

A computational pipeline for protein structure prediction and analysis at genome scale.

Shah M, Passovets S, Kim D, Ellrott K, Wang L, Vokler I, LoCascio P, Xu D, Xu Y. Shah M, et al. Among authors: xu d, xu y. Bioinformatics. 2003 Oct 12;19(15):1985-96. doi: 10.1093/bioinformatics/btg262. Bioinformatics. 2003. PMID: 14555633

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