Haas BJ - Search Results

1

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK Jr, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O. Haas BJ, et al. Nucleic Acids Res. 2003 Oct 1;31(19):5654-66. doi: 10.1093/nar/gkg770. Nucleic Acids Res. 2003. PMID: 14500829 Free PMC article.

2

The TIGR Rice Genome Annotation Resource: improvements and new features.

Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR. Ouyang S, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7. doi: 10.1093/nar/gkl976. Epub 2006 Dec 1. Nucleic Acids Res. 2007. PMID: 17145706 Free PMC article.

3

Full-length messenger RNA sequences greatly improve genome annotation.

Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL. Haas BJ, et al. Genome Biol. 2002;3(6):RESEARCH0029. doi: 10.1186/gb-2002-3-6-research0029. Epub 2002 May 30. Genome Biol. 2002. PMID: 12093376 Free PMC article.

4

Computational discovery of internal micro-exons.

Volfovsky N, Haas BJ, Salzberg SL. Volfovsky N, et al. Among authors: haas bj. Genome Res. 2003 Jun;13(6A):1216-21. doi: 10.1101/gr.677503. Genome Res. 2003. PMID: 12799353 Free PMC article.

5

Annotation of the Arabidopsis genome.

Wortman JR, Haas BJ, Hannick LI, Smith RK Jr, Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, White OR, Town CD. Wortman JR, et al. Among authors: haas bj. Plant Physiol. 2003 Jun;132(2):461-8. doi: 10.1104/pp.103.022251. Plant Physiol. 2003. PMID: 12805579 Free PMC article. No abstract available.

6

DAGchainer: a tool for mining segmental genome duplications and synteny.

Haas BJ, Delcher AL, Wortman JR, Salzberg SL. Haas BJ, et al. Bioinformatics. 2004 Dec 12;20(18):3643-6. doi: 10.1093/bioinformatics/bth397. Epub 2004 Jul 9. Bioinformatics. 2004. PMID: 15247098

7

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.

Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK Jr, Maiti R, Chan AP, Yu C, Farzad M, Wu D, White O, Town CD. Haas BJ, et al. BMC Biol. 2005 Mar 22;3:7. doi: 10.1186/1741-7007-3-7. BMC Biol. 2005. PMID: 15784138 Free PMC article.

8

Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis.

Ayele M, Haas BJ, Kumar N, Wu H, Xiao Y, Van Aken S, Utterback TR, Wortman JR, White OR, Town CD. Ayele M, et al. Among authors: haas bj. Genome Res. 2005 Apr;15(4):487-95. doi: 10.1101/gr.3176505. Genome Res. 2005. PMID: 15805490 Free PMC article.

9

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.

Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR. Campbell MA, et al. Among authors: haas bj. BMC Genomics. 2006 Dec 28;7:327. doi: 10.1186/1471-2164-7-327. BMC Genomics. 2006. PMID: 17194304 Free PMC article.

10

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.

Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. Haas BJ, et al. Genome Biol. 2008 Jan 11;9(1):R7. doi: 10.1186/gb-2008-9-1-r7. Genome Biol. 2008. PMID: 18190707 Free PMC article.

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