Do CB - Search Results

1

Glocal alignment: finding rearrangements during alignment.

Brudno M, Malde S, Poliakov A, Do CB, Couronne O, Dubchak I, Batzoglou S. Brudno M, et al. Among authors: do cb. Bioinformatics. 2003;19 Suppl 1:i54-62. doi: 10.1093/bioinformatics/btg1005. Bioinformatics. 2003. PMID: 12855437

2

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.

Brudno M, Do CB, Cooper GM, Kim MF, Davydov E; NISC Comparative Sequencing Program; Green ED, Sidow A, Batzoglou S. Brudno M, et al. Among authors: do cb. Genome Res. 2003 Apr;13(4):721-31. doi: 10.1101/gr.926603. Epub 2003 Mar 12. Genome Res. 2003. PMID: 12654723 Free PMC article.

3

ProbCons: Probabilistic consistency-based multiple sequence alignment.

Do CB, Mahabhashyam MS, Brudno M, Batzoglou S. Do CB, et al. Genome Res. 2005 Feb;15(2):330-40. doi: 10.1101/gr.2821705. Genome Res. 2005. PMID: 15687296 Free PMC article.

4

CONTRAfold: RNA secondary structure prediction without physics-based models.

Do CB, Woods DA, Batzoglou S. Do CB, et al. Bioinformatics. 2006 Jul 15;22(14):e90-8. doi: 10.1093/bioinformatics/btl246. Bioinformatics. 2006. PMID: 16873527 Free article.

5

A max-margin model for efficient simultaneous alignment and folding of RNA sequences.

Do CB, Foo CS, Batzoglou S. Do CB, et al. Bioinformatics. 2008 Jul 1;24(13):i68-76. doi: 10.1093/bioinformatics/btn177. Bioinformatics. 2008. PMID: 18586747 Free PMC article.

6

Evidence for intelligent (algorithm) design.

Srinivasan BS, Do CB, Batzoglou S. Srinivasan BS, et al. Among authors: do cb. Genome Biol. 2006;7(7):322. doi: 10.1186/gb-2006-7-7-322. Genome Biol. 2006. PMID: 16879725 Free PMC article.

7

Multiple alignment of protein sequences with repeats and rearrangements.

Phuong TM, Do CB, Edgar RC, Batzoglou S. Phuong TM, et al. Among authors: do cb. Nucleic Acids Res. 2006;34(20):5932-42. doi: 10.1093/nar/gkl511. Epub 2006 Oct 26. Nucleic Acids Res. 2006. PMID: 17068081 Free PMC article.

8

CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction.

Gross SS, Do CB, Sirota M, Batzoglou S. Gross SS, et al. Among authors: do cb. Genome Biol. 2007;8(12):R269. doi: 10.1186/gb-2007-8-12-r269. Genome Biol. 2007. PMID: 18096039 Free PMC article.

9

A Classifier-based approach to identify genetic similarities between diseases.

Schaub MA, Kaplow IM, Sirota M, Do CB, Butte AJ, Batzoglou S. Schaub MA, et al. Among authors: do cb. Bioinformatics. 2009 Jun 15;25(12):i21-9. doi: 10.1093/bioinformatics/btp226. Bioinformatics. 2009. PMID: 19477990 Free PMC article.

10

Automatic parameter learning for multiple local network alignment.

Flannick J, Novak A, Do CB, Srinivasan BS, Batzoglou S. Flannick J, et al. Among authors: do cb. J Comput Biol. 2009 Aug;16(8):1001-22. doi: 10.1089/cmb.2009.0099. J Comput Biol. 2009. PMID: 19645599 Free PMC article.

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