Collado-Vides J - Search Results

1

The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.

González V, Bustos P, Ramírez-Romero MA, Medrano-Soto A, Salgado H, Hernández-González I, Hernández-Celis JC, Quintero V, Moreno-Hagelsieb G, Girard L, Rodríguez O, Flores M, Cevallos MA, Collado-Vides J, Romero D, Dávila G. González V, et al. Genome Biol. 2003;4(6):R36. doi: 10.1186/gb-2003-4-6-r36. Epub 2003 May 13. Genome Biol. 2003. PMID: 12801410 Free PMC article.

2

Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA.

Benítez-Bellón E, Moreno-Hagelsieb G, Collado-Vides J. Benítez-Bellón E, et al. Genome Biol. 2002;3(3):RESEARCH0013. doi: 10.1186/gb-2002-3-3-research0013. Epub 2002 Feb 21. Genome Biol. 2002. PMID: 11897025 Free PMC article.

3

Operon conservation from the point of view of Escherichia coli, and inference of functional interdependence of gene products from genome context.

Moreno-Hagelsieb G, Collado-Vides J. Moreno-Hagelsieb G, et al. In Silico Biol. 2002;2(2):87-95. In Silico Biol. 2002. PMID: 12066843

4

A powerful non-homology method for the prediction of operons in prokaryotes.

Moreno-Hagelsieb G, Collado-Vides J. Moreno-Hagelsieb G, et al. Bioinformatics. 2002;18 Suppl 1:S329-36. doi: 10.1093/bioinformatics/18.suppl_1.s329. Bioinformatics. 2002. PMID: 12169563

5

With the finished human genome in hand, what next?

Collado-Vides J, Medrano-Soto A, Tusié-Luna MT. Collado-Vides J, et al. Genome Biol. 2003;4(7):328. doi: 10.1186/gb-2003-4-7-328. Epub 2003 Jun 27. Genome Biol. 2003. PMID: 12844356 Free PMC article.

6

Conservation of DNA curvature signals in regulatory regions of prokaryotic genes.

Jáuregui R, Abreu-Goodger C, Moreno-Hagelsieb G, Collado-Vides J, Merino E. Jáuregui R, et al. Nucleic Acids Res. 2003 Dec 1;31(23):6770-7. doi: 10.1093/nar/gkg882. Nucleic Acids Res. 2003. PMID: 14627810 Free PMC article.

7

Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach.

Martínez-Antonio A, Salgado H, Gama-Castro S, Gutiérrez-Ríos RM, Jiménez-Jacinto V, Collado-Vides J. Martínez-Antonio A, et al. Biotechnol Bioeng. 2003 Dec 30;84(7):743-9. doi: 10.1002/bit.10846. Biotechnol Bioeng. 2003. PMID: 14708114

8

Distribution of minigenes in the bacteriophage lambda chromosome.

Oviedo NA, Salgado H, Collado-Vides J, Guarneros G. Oviedo NA, et al. Gene. 2004 Mar 31;329:115-24. doi: 10.1016/j.gene.2003.12.031. Gene. 2004. PMID: 15033534

9

Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes.

Medrano-Soto A, Moreno-Hagelsieb G, Vinuesa P, Christen JA, Collado-Vides J. Medrano-Soto A, et al. Mol Biol Evol. 2004 Oct;21(10):1884-94. doi: 10.1093/molbev/msh202. Epub 2004 Jul 7. Mol Biol Evol. 2004. PMID: 15240837

10

Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons.

Janga SC, Collado-Vides J, Moreno-Hagelsieb G. Janga SC, et al. Nucleic Acids Res. 2005 May 2;33(8):2521-30. doi: 10.1093/nar/gki545. Print 2005. Nucleic Acids Res. 2005. PMID: 15867197 Free PMC article.

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