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Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set.
Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbón MH, Bobadilla del Valle M, Fyfe J, García-García L, Rastogi N, Sola C, Zozio T, Guerrero MI, León CI, Crabtree J, Angiuoli S, Eisenach KD, Durmaz R, Joloba ML, Rendón A, Sifuentes-Osornio J, Ponce de León A, Cave MD, Fleischmann R, Whittam TS, Alland D. Filliol I, et al. J Bacteriol. 2006 Jan;188(2):759-72. doi: 10.1128/JB.188.2.759-772.2006. J Bacteriol. 2006. PMID: 16385065 Free PMC article.
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.
Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, Peterson J, DeBoy R, Dodson R, Gwinn M, Haft D, Hickey E, Kolonay JF, Nelson WC, Umayam LA, Ermolaeva M, Salzberg SL, Delcher A, Utterback T, Weidman J, Khouri H, Gill J, Mikula A, Bishai W, Jacobs WR Jr, Venter JC, Fraser CM. Fleischmann RD, et al. J Bacteriol. 2002 Oct;184(19):5479-90. doi: 10.1128/JB.184.19.5479-5490.2002. J Bacteriol. 2002. PMID: 12218036 Free PMC article.
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.
Nelson KE, Fleischmann RD, DeBoy RT, Paulsen IT, Fouts DE, Eisen JA, Daugherty SC, Dodson RJ, Durkin AS, Gwinn M, Haft DH, Kolonay JF, Nelson WC, Mason T, Tallon L, Gray J, Granger D, Tettelin H, Dong H, Galvin JL, Duncan MJ, Dewhirst FE, Fraser CM. Nelson KE, et al. Among authors: fleischmann rd. J Bacteriol. 2003 Sep;185(18):5591-601. doi: 10.1128/JB.185.18.5591-5601.2003. J Bacteriol. 2003. PMID: 12949112 Free PMC article.
Genome data: what do we learn?
Nierman WC, Eisen JA, Fleischmann RD, Fraser CM. Nierman WC, et al. Among authors: fleischmann rd. Curr Opin Struct Biol. 2000 Jun;10(3):343-8. doi: 10.1016/s0959-440x(00)00094-4. Curr Opin Struct Biol. 2000. PMID: 10851186 Review.
Comparative genomics and understanding of microbial biology.
Fraser CM, Eisen J, Fleischmann RD, Ketchum KA, Peterson S. Fraser CM, et al. Among authors: fleischmann rd. Emerg Infect Dis. 2000 Sep-Oct;6(5):505-12. doi: 10.3201/eid0605.000510. Emerg Infect Dis. 2000. PMID: 10998382 Free PMC article. Review.
112 results