Poleksic A - Search Results

1

Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases.

Neuwald AF, Kannan N, Poleksic A, Hata N, Liu JS. Neuwald AF, et al. Among authors: poleksic a. Genome Res. 2003 Apr;13(4):673-92. doi: 10.1101/gr.862303. Genome Res. 2003. PMID: 12671004 Free PMC article.

2

PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein.

Neuwald AF, Poleksic A. Neuwald AF, et al. Among authors: poleksic a. Nucleic Acids Res. 2000 Sep 15;28(18):3570-80. doi: 10.1093/nar/28.18.3570. Nucleic Acids Res. 2000. PMID: 10982878 Free PMC article.

3

The possible role of glutamate uptake in metaphit-induced seizures.

Lipovac MN, Holland T, Poleksic A, Killian C, Lajtha A. Lipovac MN, et al. Among authors: poleksic a. Neurochem Res. 2003 May;28(5):723-31. doi: 10.1023/a:1022861700905. Neurochem Res. 2003. PMID: 12716023

4

STRUCTFAST: protein sequence remote homology detection and alignment using novel dynamic programming and profile-profile scoring.

Debe DA, Danzer JF, Goddard WA, Poleksic A. Debe DA, et al. Among authors: poleksic a. Proteins. 2006 Sep 1;64(4):960-7. doi: 10.1002/prot.21049. Proteins. 2006. PMID: 16786595

5

On the difference in quality between current heuristic and optimal solutions to the protein structure alignment problem.

Arriagada M, Poleksic A. Arriagada M, et al. Among authors: poleksic a. Biomed Res Int. 2013;2013:459248. doi: 10.1155/2013/459248. Epub 2012 Dec 23. Biomed Res Int. 2013. PMID: 23509725 Free PMC article.

6

SPINFAST: using structure alignment profiles to enhance the accuracy and assess the reliability of protein side-chain modeling.

Poleksic A, Danzer JF, Palmer BA, Olafson BD, Debe DA. Poleksic A, et al. Proteins. 2006 Dec 1;65(4):953-8. doi: 10.1002/prot.21154. Proteins. 2006. PMID: 17006949

7

Optimizing a widely used protein structure alignment measure in expected polynomial time.

Poleksic A. Poleksic A. IEEE/ACM Trans Comput Biol Bioinform. 2011 Nov-Dec;8(6):1716-20. doi: 10.1109/TCBB.2011.122. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 21904019

8

Convergent Island Statistics: a fast method for determining local alignment score significance.

Poleksic A, Danzer JF, Hambly K, Debe DA. Poleksic A, et al. Bioinformatics. 2005 Jun 15;21(12):2827-31. doi: 10.1093/bioinformatics/bti433. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817690

9

Algorithms for optimal protein structure alignment.

Poleksic A. Poleksic A. Bioinformatics. 2009 Nov 1;25(21):2751-6. doi: 10.1093/bioinformatics/btp530. Epub 2009 Sep 4. Bioinformatics. 2009. PMID: 19734152

We also present a polynomial time algorithm for finding a near-optimal superposition of two proteins. Aside from having a relatively low cost, the algorithm for near-optimal solution returns a superposition of provable quality. ...

We also present a polynomial time algorithm for finding a near-optimal superposition of two proteins. Aside from having a …

10

Optimal pairwise alignment of fixed protein structures in subquadratic time.

Poleksic A. Poleksic A. J Bioinform Comput Biol. 2011 Jun;9(3):367-82. doi: 10.1142/s0219720011005562. J Bioinform Comput Biol. 2011. PMID: 21714130

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

25 results

Search Page

Filters