Bahar I - Search Results

1

Computing the transition state populations in simple protein models.

Ozkan SB, Dill KA, Bahar I. Ozkan SB, et al. Among authors: bahar i. Biopolymers. 2003 Jan;68(1):35-46. doi: 10.1002/bip.10280. Biopolymers. 2003. PMID: 12579578

2

Transition states and the meaning of Phi-values in protein folding kinetics.

Ozkan SB, Bahar I, Dill KA. Ozkan SB, et al. Among authors: bahar i. Nat Struct Biol. 2001 Sep;8(9):765-9. doi: 10.1038/nsb0901-765. Nat Struct Biol. 2001. PMID: 11524678

3

Fast-folding protein kinetics, hidden intermediates, and the sequential stabilization model.

Ozkan SB, Dill KA, Bahar I. Ozkan SB, et al. Among authors: bahar i. Protein Sci. 2002 Aug;11(8):1958-70. doi: 10.1110/ps.0207102. Protein Sci. 2002. PMID: 12142450 Free PMC article.

4

Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.

Xu C, Tobi D, Bahar I. Xu C, et al. Among authors: bahar i. J Mol Biol. 2003 Oct 10;333(1):153-68. doi: 10.1016/j.jmb.2003.08.027. J Mol Biol. 2003. PMID: 14516750

5

iGNM: a database of protein functional motions based on Gaussian Network Model.

Yang LW, Liu X, Jursa CJ, Holliman M, Rader AJ, Karimi HA, Bahar I. Yang LW, et al. Among authors: bahar i. Bioinformatics. 2005 Jul 1;21(13):2978-87. doi: 10.1093/bioinformatics/bti469. Epub 2005 Apr 28. Bioinformatics. 2005. PMID: 15860562 Free PMC article.

6

Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state.

Tobi D, Bahar I. Tobi D, et al. Among authors: bahar i. Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18908-13. doi: 10.1073/pnas.0507603102. Epub 2005 Dec 14. Proc Natl Acad Sci U S A. 2005. PMID: 16354836 Free PMC article.

7

Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models.

Eyal E, Chennubhotla C, Yang LW, Bahar I. Eyal E, et al. Among authors: bahar i. Bioinformatics. 2007 Jul 1;23(13):i175-84. doi: 10.1093/bioinformatics/btm186. Bioinformatics. 2007. PMID: 17646294

8

Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation.

Bahar I, Chennubhotla C, Tobi D. Bahar I, et al. Curr Opin Struct Biol. 2007 Dec;17(6):633-40. doi: 10.1016/j.sbi.2007.09.011. Epub 2007 Nov 19. Curr Opin Struct Biol. 2007. PMID: 18024008 Free PMC article. Review.

9

ProDy: protein dynamics inferred from theory and experiments.

Bakan A, Meireles LM, Bahar I. Bakan A, et al. Among authors: bahar i. Bioinformatics. 2011 Jun 1;27(11):1575-7. doi: 10.1093/bioinformatics/btr168. Epub 2011 Apr 5. Bioinformatics. 2011. PMID: 21471012 Free PMC article.

10

FlexE: Using elastic network models to compare models of protein structure.

Perez A, Yang Z, Bahar I, Dill KA, MacCallum JL. Perez A, et al. Among authors: bahar i. J Chem Theory Comput. 2012 Oct 9;8(10):3985-3991. doi: 10.1021/ct300148f. J Chem Theory Comput. 2012. PMID: 25530735 Free PMC article.

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