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E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.
Boutselakis H, Dimitropoulos D, Fillon J, Golovin A, Henrick K, Hussain A, Ionides J, John M, Keller PA, Krissinel E, McNeil P, Naim A, Newman R, Oldfield T, Pineda J, Rachedi A, Copeland J, Sitnov A, Sobhany S, Suarez-Uruena A, Swaminathan J, Tagari M, Tate J, Tromm S, Velankar S, Vranken W. Boutselakis H, et al. Among authors: vranken w. Nucleic Acids Res. 2003 Jan 1;31(1):458-62. doi: 10.1093/nar/gkg065. Nucleic Acids Res. 2003. PMID: 12520052 Free PMC article.
The CCPN project: an interim report on a data model for the NMR community.
Fogh R, Ionides J, Ulrich E, Boucher W, Vranken W, Linge JP, Habeck M, Rieping W, Bhat TN, Westbrook J, Henrick K, Gilliland G, Berman H, Thornton J, Nilges M, Markley J, Laue E. Fogh R, et al. Among authors: vranken w. Nat Struct Biol. 2002 Jun;9(6):416-8. doi: 10.1038/nsb0602-416. Nat Struct Biol. 2002. PMID: 12032555
E-MSD: an integrated data resource for bioinformatics.
Golovin A, Oldfield TJ, Tate JG, Velankar S, Barton GJ, Boutselakis H, Dimitropoulos D, Fillon J, Hussain A, Ionides JM, John M, Keller PA, Krissinel E, McNeil P, Naim A, Newman R, Pajon A, Pineda J, Rachedi A, Copeland J, Sitnov A, Sobhany S, Suarez-Uruena A, Swaminathan GJ, Tagari M, Tromm S, Vranken W, Henrick K. Golovin A, et al. Among authors: vranken w. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D211-6. doi: 10.1093/nar/gkh078. Nucleic Acids Res. 2004. PMID: 14681397 Free PMC article.
Design of a data model for developing laboratory information management and analysis systems for protein production.
Pajon A, Ionides J, Diprose J, Fillon J, Fogh R, Ashton AW, Berman H, Boucher W, Cygler M, Deleury E, Esnouf R, Janin J, Kim R, Krimm I, Lawson CL, Oeuillet E, Poupon A, Raymond S, Stevens T, van Tilbeurgh H, Westbrook J, Wood P, Ulrich E, Vranken W, Xueli L, Laue E, Stuart DI, Henrick K. Pajon A, et al. Among authors: vranken w. Proteins. 2005 Feb 1;58(2):278-84. doi: 10.1002/prot.20303. Proteins. 2005. PMID: 15562521
A framework for scientific data modeling and automated software development.
Fogh RH, Boucher W, Vranken WF, Pajon A, Stevens TJ, Bhat TN, Westbrook J, Ionides JM, Laue ED. Fogh RH, et al. Among authors: vranken wf. Bioinformatics. 2005 Apr 15;21(8):1678-84. doi: 10.1093/bioinformatics/bti234. Epub 2004 Dec 21. Bioinformatics. 2005. PMID: 15613391
E-MSD: improving data deposition and structure quality.
Tagari M, Tate J, Swaminathan GJ, Newman R, Naim A, Vranken W, Kapopoulou A, Hussain A, Fillon J, Henrick K, Velankar S. Tagari M, et al. Among authors: vranken w. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D287-90. doi: 10.1093/nar/gkj163. Nucleic Acids Res. 2006. PMID: 16381867 Free PMC article.
Remediation of the protein data bank archive.
Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, Swaminathan J, Velankar S, Ory J, Ulrich EL, Vranken W, Westbrook J, Yamashita R, Yang H, Young J, Yousufuddin M, Berman HM. Henrick K, et al. Among authors: vranken w. Nucleic Acids Res. 2008 Jan;36(Database issue):D426-33. doi: 10.1093/nar/gkm937. Epub 2007 Dec 11. Nucleic Acids Res. 2008. PMID: 18073189 Free PMC article.
PDBe: Protein Data Bank in Europe.
Velankar S, Best C, Beuth B, Boutselakis CH, Cobley N, Sousa Da Silva AW, Dimitropoulos D, Golovin A, Hirshberg M, John M, Krissinel EB, Newman R, Oldfield T, Pajon A, Penkett CJ, Pineda-Castillo J, Sahni G, Sen S, Slowley R, Suarez-Uruena A, Swaminathan J, van Ginkel G, Vranken WF, Henrick K, Kleywegt GJ. Velankar S, et al. Among authors: vranken wf. Nucleic Acids Res. 2010 Jan;38(Database issue):D308-17. doi: 10.1093/nar/gkp916. Epub 2009 Oct 25. Nucleic Acids Res. 2010. PMID: 19858099 Free PMC article.
MEMOPS: data modelling and automatic code generation.
Fogh RH, Boucher W, Ionides JM, Vranken WF, Stevens TJ, Laue ED. Fogh RH, et al. Among authors: vranken wf. J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-123. J Integr Bioinform. 2010. PMID: 20375445 Free article.
124 results