Bonati L - Search Results

1

Ligand binding and activation of the Ah receptor.

Denison MS, Pandini A, Nagy SR, Baldwin EP, Bonati L. Denison MS, et al. Among authors: bonati l. Chem Biol Interact. 2002 Sep 20;141(1-2):3-24. doi: 10.1016/s0009-2797(02)00063-7. Chem Biol Interact. 2002. PMID: 12213382 Free article. Review.

2

Conservation and specialization in PAS domain dynamics.

Pandini A, Bonati L. Pandini A, et al. Among authors: bonati l. Protein Eng Des Sel. 2005 Mar;18(3):127-37. doi: 10.1093/protein/gzi017. Epub 2005 Apr 8. Protein Eng Des Sel. 2005. PMID: 15820977

3

Evidence that ligand binding is a key determinant of Ah receptor-mediated transcriptional activity.

Murray IA, Reen RK, Leathery N, Ramadoss P, Bonati L, Gonzalez FJ, Peters JM, Perdew GH. Murray IA, et al. Among authors: bonati l. Arch Biochem Biophys. 2005 Oct 1;442(1):59-71. doi: 10.1016/j.abb.2005.07.014. Arch Biochem Biophys. 2005. PMID: 16137638

4

MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database.

Pandini A, Bonati L, Fraternali F, Kleinjung J. Pandini A, et al. Among authors: bonati l. Bioinformatics. 2007 Feb 15;23(4):515-6. doi: 10.1093/bioinformatics/btl637. Epub 2007 Jan 3. Bioinformatics. 2007. PMID: 17204463

5

Structural and functional characterization of the aryl hydrocarbon receptor ligand binding domain by homology modeling and mutational analysis.

Pandini A, Denison MS, Song Y, Soshilov AA, Bonati L. Pandini A, et al. Among authors: bonati l. Biochemistry. 2007 Jan 23;46(3):696-708. doi: 10.1021/bi061460t. Biochemistry. 2007. PMID: 17223691 Free PMC article.

6

Detecting similarities among distant homologous proteins by comparison of domain flexibilities.

Pandini A, Mauri G, Bordogna A, Bonati L. Pandini A, et al. Among authors: bonati l. Protein Eng Des Sel. 2007 Jun;20(6):285-99. doi: 10.1093/protein/gzm021. Epub 2007 Jun 15. Protein Eng Des Sel. 2007. PMID: 17573407

7

Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis.

Pandini A, Soshilov AA, Song Y, Zhao J, Bonati L, Denison MS. Pandini A, et al. Among authors: bonati l. Biochemistry. 2009 Jun 30;48(25):5972-83. doi: 10.1021/bi900259z. Biochemistry. 2009. PMID: 19456125 Free PMC article.

8

Predicting the accuracy of protein-ligand docking on homology models.

Bordogna A, Pandini A, Bonati L. Bordogna A, et al. Among authors: bonati l. J Comput Chem. 2011 Jan 15;32(1):81-98. doi: 10.1002/jcc.21601. J Comput Chem. 2011. PMID: 20607693 Free PMC article.

9

Computational approaches to shed light on molecular mechanisms in biological processes.

Moro G, Bonati L, Bruschi M, Cosentino U, De Gioia L, Fantucci PC, Pandini A, Papaleo E, Pitea D, Saracino GA, Zampella G. Moro G, et al. Among authors: bonati l. Theor Chem Acc. 2007 May 1;117(5-6):723-741. doi: 10.1007/s00214-006-0203-4. Theor Chem Acc. 2007. PMID: 21415934 Free PMC article.

10

Conformational and functional analysis of molecular dynamics trajectories by self-organising maps.

Fraccalvieri D, Pandini A, Stella F, Bonati L. Fraccalvieri D, et al. Among authors: bonati l. BMC Bioinformatics. 2011 May 14;12:158. doi: 10.1186/1471-2105-12-158. BMC Bioinformatics. 2011. PMID: 21569575 Free PMC article.

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