Baker D - Search Results

1

De novo determination of protein backbone structure from residual dipolar couplings using Rosetta.

Rohl CA, Baker D. Rohl CA, et al. Among authors: baker d. J Am Chem Soc. 2002 Mar 20;124(11):2723-9. doi: 10.1021/ja016880e. J Am Chem Soc. 2002. PMID: 11890823

2

Local sequence-structure correlations in proteins.

Bystroff C, Simons KT, Han KF, Baker D. Bystroff C, et al. Among authors: baker d. Curr Opin Biotechnol. 1996 Aug;7(4):417-21. doi: 10.1016/s0958-1669(96)80117-0. Curr Opin Biotechnol. 1996. PMID: 8768900 Review.

3

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.

Simons KT, Kooperberg C, Huang E, Baker D. Simons KT, et al. Among authors: baker d. J Mol Biol. 1997 Apr 25;268(1):209-25. doi: 10.1006/jmbi.1997.0959. J Mol Biol. 1997. PMID: 9149153

4

Blind predictions of local protein structure in CASP2 targets using the I-sites library.

Bystroff C, Baker D. Bystroff C, et al. Among authors: baker d. Proteins. 1997;Suppl 1:167-71. doi: 10.1002/(sici)1097-0134(1997)1+<167::aid-prot21>3.3.co;2-y. Proteins. 1997. PMID: 9485508

5

Contact order, transition state placement and the refolding rates of single domain proteins.

Plaxco KW, Simons KT, Baker D. Plaxco KW, et al. Among authors: baker d. J Mol Biol. 1998 Apr 10;277(4):985-94. doi: 10.1006/jmbi.1998.1645. J Mol Biol. 1998. PMID: 9545386

6

Prediction of local structure in proteins using a library of sequence-structure motifs.

Bystroff C, Baker D. Bystroff C, et al. Among authors: baker d. J Mol Biol. 1998 Aug 21;281(3):565-77. doi: 10.1006/jmbi.1998.1943. J Mol Biol. 1998. PMID: 9698570

7

Clustering of low-energy conformations near the native structures of small proteins.

Shortle D, Simons KT, Baker D. Shortle D, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11158-62. doi: 10.1073/pnas.95.19.11158. Proc Natl Acad Sci U S A. 1998. PMID: 9736706 Free PMC article.

8

Prediction and structural characterization of an independently folding substructure in the src SH3 domain.

Yi Q, Bystroff C, Rajagopal P, Klevit RE, Baker D. Yi Q, et al. Among authors: baker d. J Mol Biol. 1998;283(1):293-300. doi: 10.1006/jmbi.1998.2072. J Mol Biol. 1998. PMID: 9761691

9

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins.

Simons KT, Ruczinski I, Kooperberg C, Fox BA, Bystroff C, Baker D. Simons KT, et al. Among authors: baker d. Proteins. 1999 Jan 1;34(1):82-95. doi: 10.1002/(sici)1097-0134(19990101)34:1<82::aid-prot7>3.0.co;2-a. Proteins. 1999. PMID: 10336385

10

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.

Alm E, Baker D. Alm E, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 1999 Sep 28;96(20):11305-10. doi: 10.1073/pnas.96.20.11305. Proc Natl Acad Sci U S A. 1999. PMID: 10500172 Free PMC article.

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