Baggerly KA - Search Results

1

Identifying differentially expressed genes in cDNA microarray experiments.

Baggerly KA, Coombes KR, Hess KR, Stivers DN, Abruzzo LV, Zhang W. Baggerly KA, et al. J Comput Biol. 2001;8(6):639-59. doi: 10.1089/106652701753307539. J Comput Biol. 2001. PMID: 11747617

2

Microarrays: handling the deluge of data and extracting reliable information.

Hess KR, Zhang W, Baggerly KA, Stivers DN, Coombes KR. Hess KR, et al. Among authors: baggerly ka. Trends Biotechnol. 2001 Nov;19(11):463-8. doi: 10.1016/s0167-7799(01)01792-9. Trends Biotechnol. 2001. PMID: 11602311 Review.

3

Sources of nonlinearity in cDNA microarray expression measurements.

Ramdas L, Coombes KR, Baggerly K, Abruzzo L, Highsmith WE, Krogmann T, Hamilton SR, Zhang W. Ramdas L, et al. Genome Biol. 2001;2(11):RESEARCH0047. doi: 10.1186/gb-2001-2-11-research0047. Epub 2001 Oct 18. Genome Biol. 2001. PMID: 11737946 Free PMC article.

4

Obtaining reliable information from minute amounts of RNA using cDNA microarrays.

Hu L, Wang J, Baggerly K, Wang H, Fuller GN, Hamilton SR, Coombes KR, Zhang W. Hu L, et al. BMC Genomics. 2002 Jun 21;3:16. doi: 10.1186/1471-2164-3-16. Epub 2002 Jun 21. BMC Genomics. 2002. PMID: 12086591 Free PMC article.

5

Identifying and quantifying sources of variation in microarray data using high-density cDNA membrane arrays.

Coombes KR, Highsmith WE, Krogmann TA, Baggerly KA, Stivers DN, Abruzzo LV. Coombes KR, et al. Among authors: baggerly ka. J Comput Biol. 2002;9(4):655-69. doi: 10.1089/106652702760277372. J Comput Biol. 2002. PMID: 12323099

6

A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization-time of flight proteomics spectra from serum samples.

Baggerly KA, Morris JS, Wang J, Gold D, Xiao LC, Coombes KR. Baggerly KA, et al. Proteomics. 2003 Sep;3(9):1667-72. doi: 10.1002/pmic.200300522. Proteomics. 2003. PMID: 12973722

7

Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization.

Coombes KR, Fritsche HA Jr, Clarke C, Chen JN, Baggerly KA, Morris JS, Xiao LC, Hung MC, Kuerer HM. Coombes KR, et al. Among authors: baggerly ka. Clin Chem. 2003 Oct;49(10):1615-23. doi: 10.1373/49.10.1615. Clin Chem. 2003. PMID: 14500586

8

Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE.

Morris JS, Baggerly KA, Coombes KR. Morris JS, et al. Among authors: baggerly ka. Biometrics. 2003 Sep;59(3):476-86. doi: 10.1111/1541-0420.00057. Biometrics. 2003. PMID: 14601748

9

Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments.

Baggerly KA, Morris JS, Coombes KR. Baggerly KA, et al. Bioinformatics. 2004 Mar 22;20(5):777-85. doi: 10.1093/bioinformatics/btg484. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751995

10

Response to Preprocessing of oligonucleotide array data.

Zhang L, Wu C, Carta R, Baggerly K, Coombes KR. Zhang L, et al. Nat Biotechnol. 2004 Jun;22(6):658. doi: 10.1038/nbt0604-658. Nat Biotechnol. 2004. PMID: 15175679 No abstract available.

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