NotI linking/jumping clones of human chromosome 3: mapping of the TFRC, RAB7 and HAUSP genes to regions rearranged in leukemia and deleted in solid tumors

FEBS Lett. 1997 Dec 15;419(2-3):181-5. doi: 10.1016/s0014-5793(97)01449-x.

Abstract

By applying the 'recognition mask' strategy to 300 mammalian sequences containing NotI sites we demonstrated that 5' ends of genes are highly enriched in NotI sites. A NotI linking clone NL2-252 (D3S1678) containing transferrin receptor (TFRC) gene was used as an initial point for chromosomal jumping. One of the jumping clones, J21-045 traverses 210 kbp and links NL2-252 to NL26 (D3S1632), a NotI linking clone containing highly polymorphic sequences. The TFRC gene was mapped to 3q29, close to the telomeric marker D3S2344, by linkage analysis, a panel of hybrid cell lines, GeneBridge 4 panel and FISH. Clone NLM-007 (D3S4302) was found to contain ras-homologous gene RAB7. By FISH and a panel of hybrid cell lines this gene was mapped to 3q21. This region is of particular interest due to frequent rearrangements in different types of leukemia. Clone L2-081 (D3S4283) containing new member of ubiquitin-specific proteases (HAUSP gene) was localized in 3p21 inspiring further investigation of involvement of this gene in development of lung and renal carcinomas.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromosome Mapping*
  • Chromosomes, Human, Pair 3*
  • Cloning, Molecular
  • Endopeptidases / genetics*
  • GTP-Binding Proteins / genetics*
  • Gene Library*
  • Gene Rearrangement
  • Genome, Human*
  • Humans
  • Leukemia / genetics*
  • Molecular Sequence Data
  • Neoplasms / genetics*
  • Receptors, Transferrin / genetics*
  • Ubiquitin Thiolesterase
  • Ubiquitin-Specific Peptidase 7
  • rab GTP-Binding Proteins*
  • rab7 GTP-Binding Proteins

Substances

  • Receptors, Transferrin
  • rab7 GTP-Binding Proteins
  • rab7 GTP-binding proteins, human
  • Endopeptidases
  • USP7 protein, human
  • Ubiquitin Thiolesterase
  • Ubiquitin-Specific Peptidase 7
  • GTP-Binding Proteins
  • rab GTP-Binding Proteins

Associated data

  • GENBANK/Z22474
  • GENBANK/Z94768