A mutant RNA polymerase that forms unusual open promoter complexes

Proc Natl Acad Sci U S A. 1997 Dec 9;94(25):13481-6. doi: 10.1073/pnas.94.25.13481.

Abstract

We describe a mutant Escherichia coli RNA polymerase (RNAP) that forms stable open promoter complexes even at -20 degrees C but with a shortened melted region that extends downstream to only position -7. In the presence of initiating transcription substrates, the mutant RNAP undergoes a temperature-dependent isomerization, resulting in a promoter complex that is indistinguishable from the wild-type RNAP-promoter complex, with the melted region extended downstream to position +4. We propose that the open complex formed by the mutant RNAP represents an intermediate on the normal promoter-opening pathway and that our results support earlier findings that initial promoter opening occurs in the upstream region of the -10 promoter consensus element and subsequently extends downstream to encompass the transcription start site.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Binding Sites / genetics
  • DNA, Bacterial / genetics
  • DNA, Bacterial / metabolism
  • DNA-Directed RNA Polymerases / chemistry
  • DNA-Directed RNA Polymerases / genetics*
  • DNA-Directed RNA Polymerases / metabolism*
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Macromolecular Substances
  • Molecular Sequence Data
  • Mutation*
  • Promoter Regions, Genetic*
  • Protein Conformation
  • Sequence Deletion
  • Temperature
  • Thermodynamics
  • Transcription, Genetic

Substances

  • DNA, Bacterial
  • Macromolecular Substances
  • DNA-Directed RNA Polymerases