SWI/SNF stimulates the formation of disparate activator-nucleosome complexes but is partially redundant with cooperative binding

J Biol Chem. 1997 May 9;272(19):12642-9. doi: 10.1074/jbc.272.19.12642.

Abstract

To investigate the potential mechanisms by which the SWI/SNF complex differentially regulates different genes we have tested whether transcription factors with diverse DNA binding domains were able to exploit nucleosome disruption by SWI/SNF. In addition to GAL4-VP16, the SWI/SNF complex stimulated nucleosome binding by the Zn2+ fingers of Sp1, the basic helix-loop-helix domain of USF, and the rel domain of NF-kappaB. In each case SWI/SNF action resulted in the formation of a stable factor-nucleosome complex that persisted after detachment of SWI/SNF from the nucleosome. Thus, stimulation of factor binding by SWI/SNF appears to be universal. The degree of SWI/SNF stimulation of nucleosome binding by a factor appears to be inversely related to the extent that binding is inhibited by the histone octamer. Cooperative binding of 5 GAL4-VP16 dimers to a 5-site nucleosome enhanced GAL4 binding relative to a single-site nucleosome, but this also reduced the degree of stimulation by SWI/SNF. The SWI/SNF complex increased the affinity of 5 GAL4-VP16 dimers for nucleosomes equal to that of DNA but no further. Similarly, multimerized NF-kappaB sites enhanced nucleosome binding by NF-kappaB and reduced the stimulatory effect of SWI/SNF. Thus, cooperative binding of factors to nucleosomes is partially redundant with the function of the SWI/SNF complex.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Chromosomal Proteins, Non-Histone
  • DNA / metabolism
  • DNA Footprinting
  • DNA-Binding Proteins
  • Fungal Proteins / metabolism*
  • Macromolecular Substances
  • Models, Molecular
  • NF-kappa B / metabolism
  • Nuclear Proteins
  • Nucleic Acid Conformation
  • Nucleosomes / metabolism*
  • SMARCB1 Protein
  • Saccharomyces cerevisiae Proteins*
  • Sp1 Transcription Factor / metabolism
  • Trans-Activators / metabolism*
  • Transcription Factors

Substances

  • Chromosomal Proteins, Non-Histone
  • DNA-Binding Proteins
  • Fungal Proteins
  • Gal-VP16
  • Macromolecular Substances
  • NF-kappa B
  • Nuclear Proteins
  • Nucleosomes
  • SMARCB1 Protein
  • SMARCB1 protein, human
  • SNF11 protein, S cerevisiae
  • SNF12 protein, S cerevisiae
  • SWI3 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Sp1 Transcription Factor
  • Trans-Activators
  • Transcription Factors
  • Adenosine Triphosphate
  • DNA