HIV type 1 subtypes in Malaysia include B, C, and E

AIDS Res Hum Retroviruses. 1996 Nov 20;12(17):1655-7. doi: 10.1089/aid.1996.12.1655.

Abstract

PIP: Peripheral blood mononuclear cell specimens were collected from 13 HIV-1-infected IV drug users in Kuala Lumpur, Malaysia, as well as one HIV-infected baby, between 1992 and 1993. DNA was then amplified by nested polymerase chain reaction and a 345-bp fragment of the C2V3 region of the env gene was sequenced. 11 of the 14 Malaysian sequences clustered with the B' subtype, one different from the typical subtype B US strains HIVMN and HIVSF2. Two sequences grouped in the C subtype and had sister taxa closer to the Indian C subtype sequences than those from Zambia. The sequence from the infant was identified as a subtype E virus, grouped more closely with subtype E strains from Thailand than subtype E viruses from the Central African Republic.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • DNA, Viral / analysis
  • HIV Envelope Protein gp120 / genetics*
  • HIV Infections / epidemiology
  • HIV Infections / virology*
  • HIV-1 / classification
  • HIV-1 / genetics*
  • Humans
  • Malaysia / epidemiology
  • Molecular Sequence Data
  • Peptide Fragments / genetics*
  • Phylogeny

Substances

  • DNA, Viral
  • HIV Envelope Protein gp120
  • HIV envelope protein gp120 (305-321)
  • Peptide Fragments

Associated data

  • GENBANK/U65538
  • GENBANK/U65539
  • GENBANK/U65540
  • GENBANK/U65541
  • GENBANK/U65542
  • GENBANK/U65543
  • GENBANK/U65544
  • GENBANK/U65545
  • GENBANK/U65546
  • GENBANK/U65547
  • GENBANK/U65548
  • GENBANK/U65549
  • GENBANK/U65550
  • GENBANK/U65551