Sequence of a new HLA-DR4 allele with an unusual residue at position 88 that does not seem to affect T-cell allo recognition

Hum Immunol. 1996 Nov;51(1):60-2. doi: 10.1016/s0198-8859(96)00153-x.

Abstract

New HLA alleles can be identified by unorthodox patterns observed during low-resolution typing performed with sequence specific oligonucleotide probes (SSOP). One of the best examples is locus DRB1, where allelic subtypes are characterized by a combination of a limited number of residues located in three hypervariable regions of exon 2. HLA-DR oligotyping analysis of a female caucasoid bone marrow donor led to the identification of an individual that typed as DRB1*11, DRB3*02, DRB4*01, DQB1*0301-0302. This donor was, however, typed by serology as DR11 DR4, DR52, DR53, DQ7 DQ8. PCR-SSP typing for DR4 subtype revealed an amplification pattern typical for DRB1*0404. After sequencing the entire exon 2, a new DRB1 allele was identified: DRB1*04var that is identical to DRB1*0404, except for one nucleotide at codon 88 resulting in a Ser-->Arg exchange. This mutation had prevented amplification with the DR generic primers. Cellular typing by three HTCs-DRB1*0404/DW14 from the 9th Workshop showed that this DRB1*04var typed exactly like a DW14 cell. This suggests that residue 88 does not affect T cell recognition.

MeSH terms

  • Alleles*
  • Amino Acid Sequence
  • Base Sequence
  • Female
  • HLA-DR4 Antigen / chemistry
  • HLA-DR4 Antigen / genetics*
  • Humans
  • Molecular Sequence Data
  • T-Lymphocytes / immunology*

Substances

  • HLA-DR4 Antigen

Associated data

  • GENBANK/Z68503