Three conserved consensus sequences identify the NAD-binding site of ADP-ribosylating enzymes, expressed by eukaryotes, bacteria and T-even bacteriophages

Mol Microbiol. 1996 Aug;21(4):667-74. doi: 10.1046/j.1365-2958.1996.321396.x.

Abstract

It has been previously reported that the three-dimensional structures of the NAD-binding and catalytic site of bacterial toxins with ADP-ribosylating activity are superimposable, and that the key amino acids for the enzymatic activity are conserved. The model includes an NAD-binding and catalytic site formed by an alpha-helix bent over a beta-strand, surrounded by two beta-strands bearing a Glu and a His, or Arg, that are required for catalysis. We show here that the model can be extended to comprise all proteins with ADP-ribosylating activity known to date, including all eukaryotic mono- and poly-ADP-ribosyltransferases, the bacterial ADP-ribosylating enzymes which do not have toxic activity, and the analogous enzymes encoded by T-even bacteriophages. We show that, in addition to the common Glu and Arg/His amino acids previously identified, the conserved motifs can be extended as follows: (i) the Arg/His motif is usually arom-His/Arg (where 'arom' is an aromatic residue); (ii) in the sequences of the CT group the beta-strand forming part of the 'scaffold' of the catalytic cavity has an arom-ph-Ser-Thr-Ser-ph consensus (where 'ph' represents a hydrophobic residue); and (iii) the motif centered in the key glutamic residue is Glu/Gin-X-Glu; while (iv) in the sequences of the DT group the NAD-binding motif is Tyr-X10-Tyr. We believe that the model proposed not only accounts for all ADP-ribosylating proteins known to date, but it is likely to fit other enzymes (currently being analysed) which possess such an activity.

Publication types

  • Review

MeSH terms

  • ADP Ribose Transferases / chemistry*
  • Amino Acid Sequence
  • Binding Sites
  • Conserved Sequence*
  • Molecular Sequence Data
  • NAD / metabolism
  • Poly(ADP-ribose) Polymerases / chemistry*

Substances

  • NAD
  • ADP Ribose Transferases
  • Poly(ADP-ribose) Polymerases

Associated data

  • GENBANK/D16482
  • GENBANK/I27629
  • GENBANK/X69893
  • GENBANK/X69894
  • GENBANK/X73562
  • GENBANK/X82397
  • PIR/A05129
  • PIR/A29831
  • PIR/A38131
  • PIR/A41021
  • PIR/A48870
  • PIR/B38131
  • PIR/S27514
  • SWISSPROT/P04977
  • SWISSPROT/P06717
  • SWISSPROT/P09874
  • SWISSPROT/P11103
  • SWISSPROT/P12726
  • SWISSPROT/P14299
  • SWISSPROT/P15879
  • SWISSPROT/P17981
  • SWISSPROT/P17982
  • SWISSPROT/P18493
  • SWISSPROT/P20974
  • SWISSPROT/P27008
  • SWISSPROT/P31669
  • SWISSPROT/P35875
  • SWISSPROT/Q03515
  • SWISSPROT/Q08824