Fibronectin mRNA splice variant in articular cartilage lacks bases encoding the V, III-15, and I-10 protein segments

J Biol Chem. 1996 Aug 2;271(31):18954-60. doi: 10.1074/jbc.271.31.18954.

Abstract

Fibronectin is an extracellular matrix glycoprotein encoded by a single gene. Alternative RNA splicing has been reported at three sites, ED (extra type III domain)-A, ED-B, and the variable or V region. Articular cartilage fibronectin monomers are rarely (ED-A)+, but approximately 25% are (ED-B)+. RNA gel electrophoresis and Northern blot analysis identified two (ED-B)+ and two (ED-B)- fibronectin transcripts in cartilage, each pair differing by approximately 750 bases. This difference results from a previously unreported RNA splicing pattern that eliminates not only the V region but also nucleotides encoding protein segments III-15 and I-10. This new splice variant, which we designate (V+C)-, represents the majority of fibronectin transcripts in equine, canine, and rabbit articular cartilage but is absent in the liver. Reverse transcriptase-polymerase chain reaction analyses of 11 additional equine tissues failed to detect the (V+C)- splice variant, except for very low levels in lymph node, bone, aorta, and skin. Furthermore, chondrocytes grown in monolayer culture maintain high levels of fibronectin expression but stop expressing (V+C)- transcripts over time. The tissue-specific expression pattern of this novel fibronectin isoform suggests that it may have an important function in the matrix organization of cartilage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cartilage, Articular / metabolism*
  • DNA Primers / genetics
  • DNA, Complementary / genetics
  • Dogs
  • Fibronectins / chemistry
  • Fibronectins / genetics*
  • Genetic Variation
  • Horses
  • In Vitro Techniques
  • Molecular Sequence Data
  • Molecular Structure
  • Polymerase Chain Reaction
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • Rabbits
  • Sequence Homology, Nucleic Acid
  • Species Specificity

Substances

  • DNA Primers
  • DNA, Complementary
  • Fibronectins
  • RNA, Messenger

Associated data

  • GENBANK/U52105
  • GENBANK/U52106
  • GENBANK/U52107
  • GENBANK/U52108