Linkage disequilibrium mapping places the gene causing familial Mediterranean fever close to D16S246

Am J Hum Genet. 1996 Mar;58(3):523-34.

Abstract

This report presents refined genetic mapping data for the gene causing familial Mediterranean fever (FMF), a recessively inherited disorder of inflammation. We sampled 65 Jewish, Armenian, and Arab families and typed them for eight markers from chromosome 16p. Using a new algorithm that permits multipoint calculations for a dense map of markers in consanguineous families, we obtained a maximal LOD score of 49.2 at a location 1.6 cM centromeric to D16S246. A specific haplotype at D16S283-D16S94-D16S246 was found in 76% of Moroccan and 32% of non-Moroccan Jewish carrier chromosomes, but this haplotype was not overrepresented in Armenian or Arab FMF carriers. Moreover, the 2.5-kb allele at D16S246 was significantly associated with FMF in Moroccan and non-Moroccan Jews but not in Armenians or Arabs. Since the Moroccan Jewish community represents a relatively recently established and genetically isolated founder population, we analyzed the Moroccan linkage-disequilibrium data by using Luria-Delbrück formulas and simulations based on a Poisson branching process. These methods place the FMF susceptibility gene within 0.305 cM of D16S246 (2-LOD-unit range 0.02-0.64 cM).

Publication types

  • Multicenter Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Algorithms
  • Alleles
  • Arabs / genetics
  • Armenia
  • Chromosome Mapping*
  • Chromosomes, Human, Pair 16*
  • Computer Simulation
  • Familial Mediterranean Fever / ethnology
  • Familial Mediterranean Fever / genetics*
  • Haplotypes
  • Heterozygote
  • Humans
  • Jews / genetics
  • Linkage Disequilibrium*
  • Morocco