An Alu sequence interrupts a human 5-hydroxytryptamine1D receptor pseudogene

Gene. 1993 Feb 28;124(2):295-301. doi: 10.1016/0378-1119(93)90409-v.

Abstract

Molecular cloning studies have now identified six HTR genes encoding the biosynthesis of the structurally homologous human serotonin (5-hydroxytryptamine; 5-HT) receptors, namely 5-HTR1A, 5-HTR1B, 5-HTR1C, 5-HTR1D, 5-HTR2 and 5-HTRS31. Several of these receptors are encoded by intronless genes, and we now report the cloning of another intronless serotonergic HTR gene. This gene was cloned by a method using the polymerase chain reaction. The nucleotide sequence of this gene is most closely homologous to the 5-HTR1D gene; however, several stop codons, frame shifts and deletions are present in the coding region suggesting that this is a pseudogene which could not encode a functional receptor. Sequence analysis also revealed that the coding sequence of this pseudogene is disrupted by insertion of a 283-bp Alu repeat sequence.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Blotting, Northern
  • Blotting, Southern
  • Cloning, Molecular
  • Humans
  • Molecular Sequence Data
  • Pan troglodytes
  • Polymerase Chain Reaction
  • Pseudogenes*
  • Rats
  • Receptors, Serotonin / genetics*
  • Repetitive Sequences, Nucleic Acid*
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid
  • Species Specificity

Substances

  • Receptors, Serotonin

Associated data

  • GENBANK/L03650
  • GENBANK/L03651
  • GENBANK/L03652
  • GENBANK/L03653
  • GENBANK/L03654
  • GENBANK/L05438
  • GENBANK/L05439
  • GENBANK/L06179
  • GENBANK/S56520
  • GENBANK/S56527