Detection of established and novel alleles of the HLA-DPB1 locus by PCR-SSO

Vox Sang. 1993;65(4):316-9. doi: 10.1111/j.1423-0410.1993.tb02173.x.

Abstract

The polymorphism at the HLA-DPB1 locus was investigated in 490 Austrian individuals. Exon 2 sequences of the HLA-DPB1 genes were amplified by polymerase chain reaction and probed with a panel of sequence-specific oligonucleotide probes. HLA-DPB1 genotypes were deduced from the hybridization pattern of the probes. HLA-DPB1 allele frequencies and Hardy-Weinberg equilibrium were calculated. Linkage disequilibria between HLA-DPB1 and HLA-DQA1 alleles were determined. Four novel hybridization patterns indicating new alleles were found.

MeSH terms

  • Alleles*
  • Base Sequence
  • Chromosome Mapping
  • Gene Frequency
  • Genotype
  • HLA-DP Antigens / genetics*
  • HLA-DP beta-Chains
  • HLA-DQ Antigens / genetics
  • HLA-DQ alpha-Chains
  • Humans
  • Linkage Disequilibrium
  • Nucleic Acid Hybridization
  • Oligonucleotides / chemistry
  • Polymerase Chain Reaction

Substances

  • HLA-DP Antigens
  • HLA-DP beta-Chains
  • HLA-DPB1 antigen
  • HLA-DQ Antigens
  • HLA-DQ alpha-Chains
  • HLA-DQA1 antigen
  • Oligonucleotides