Common structural and expressional properties of vertebrate caldesmon genes

Biochem Biophys Res Commun. 1993 Nov 30;197(1):145-53. doi: 10.1006/bbrc.1993.2453.

Abstract

We have determined the genomic structure of chicken caldesmon (CaD) gene. The gene, 100-150 kilobases long, is composed of 17 exons. Exons 1a-1, 1a-2, and 1a-3 encode the 5'-terminal sequence specific to the mRNAs for CaDs expressed in gizzard. Exon 1b encodes the 5'-terminal sequence of the brain l-CaD and locates downstream of exons 1a-1, 1a-2, and 1a-3. The genomic construction of the chicken CaD resembles with that of the human CaD. Exon 3 of chicken CaD gene possesses the unique structure similar to that of human CaD gene; the common domain in both h- and l-CaDs (amino acid residues 74-199 for h-CaD and residues 66-191 for l-CaD) and the central repeating domain specific to h-CaD (amino acid residues 200-419) are encoded in exons 3a and 3b, respectively. Of particular interest is that the two consensus 5'-splice sites are found in the borders between exons 3a and 3b, and exon 3b and intron. Therefore, the expressional regulation between h- and l-CaDs can be explained by selection of these 5'-splice sites. Alternative 3'-splice sites also exist at intron/exon junction of exon 14 and the difference in selection of the sites would induce the specific Ala-508 insertion in the brain l-CaD.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Calmodulin-Binding Proteins / genetics*
  • Chickens / genetics*
  • Electrophoresis, Gel, Pulsed-Field
  • Exons / genetics
  • Genomic Library
  • Models, Genetic
  • Molecular Sequence Data
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid

Substances

  • Calmodulin-Binding Proteins

Associated data

  • GENBANK/D17633
  • GENBANK/D17634
  • GENBANK/D17635
  • GENBANK/D17636
  • GENBANK/D17637
  • GENBANK/D17638
  • GENBANK/D17639
  • GENBANK/D17640
  • GENBANK/D17641
  • GENBANK/D17642
  • GENBANK/D17643
  • GENBANK/D17644
  • GENBANK/D17645
  • GENBANK/D17646
  • GENBANK/D17647
  • GENBANK/D17648