A new HLA-A9 subtype lacking the Bw4 epitope. Ancestral or revertant allele?

Hum Immunol. 1995 Mar;42(3):221-6. doi: 10.1016/0198-8859(94)00104-x.

Abstract

The HLA-A9 group has been subdivided into three serologically defined splits, A23, A24, and A2403. We have found a new HLA-A9 split antigen, tentatively called A24AK, in the Japanese population. Sequence analysis of A24AK (officially assigned A*2404) showed that this new allele was different from HLA-A*2402, which codes for the common A24 antigen, by seven nucleotides, and the two alleles could be discriminated by the PCR-SSCP method. These nucleotide substitutions are predicted to result in substitution of six amino acid residues at positions 76, 79, 80, 81, 82, and 83. In all HLA-A9-group alleles described to date, this region is known to code for the Bw4 epitope, which is usually localized on HLA-B molecules. However, the new allele lacks the Bw4 coding sequence. Sequencing results are supported by results showing that the lymphocytes from A24AK-positive individuals did not react with anti-Bw4 antiserum. The nucleotide sequence of A*2404 in this region was identical to that of A*0101, A*2601, A*2602, and several other alleles. These findings suggest several possible paths of evolution of this new allele.

MeSH terms

  • Alleles*
  • Amino Acid Sequence
  • Base Sequence
  • Child
  • Female
  • HLA-A Antigens / genetics*
  • HLA-A24 Antigen
  • HLA-B Antigens / genetics*
  • Haplotypes / genetics*
  • Humans
  • Male
  • Molecular Sequence Data
  • Phylogeny*
  • Polymorphism, Single-Stranded Conformational

Substances

  • HLA-A Antigens
  • HLA-A24 Antigen
  • HLA-A9 antigen
  • HLA-B Antigens
  • HLA-Bw4 antigen

Associated data

  • GENBANK/D26550