The nucleotide sequence of the RNA-2 of an isolate of the English serotype of tomato black ring virus: RNA recombination in the history of nepoviruses

J Gen Virol. 1995 May:76 ( Pt 5):1279-83. doi: 10.1099/0022-1317-76-5-1279.

Abstract

The RNA-2 of a carrot isolate from the English serotype of tomato black ring nepovirus (TBRV-ED) has been sequenced. It is 4618 nucleotides long and contains one open reading frame encoding a polypeptide of 1344 amino acids. The 5' non-coding region contains three repetitions of a stem-loop structure also conserved in TBRV-Scottish and grapevine chrome mosaic nepovirus (GCMV). The coat protein domain was mapped to the carboxy-terminal one-third of the polyprotein. Sequence comparisons indicate that TBRV-ED RNA-2 probably arose by an RNA recombination event that resulted in the exchange of the putative movement protein gene between TBRV and GCMV.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Molecular Sequence Data
  • Nepovirus / genetics*
  • Plant Viral Movement Proteins
  • RNA, Viral / chemistry*
  • Recombination, Genetic*
  • Solanum lycopersicum / virology*
  • Viral Proteins / chemistry
  • Viral Proteins / genetics*

Substances

  • Plant Viral Movement Proteins
  • RNA, Viral
  • Viral Proteins

Associated data

  • GENBANK/X80831