Ultra-Sensitive Aptamer-Based Diagnostic Systems for Rapid Detection of All SARS-CoV-2 Variants

Int J Mol Sci. 2025 Jan 16;26(2):745. doi: 10.3390/ijms26020745.

Abstract

The emergence of numerous SARS-CoV-2 variants, characterized by mutations in the viral RNA genome and target proteins, has presented challenges for accurate COVID-19 diagnosis. To address this, we developed universal aptamer probes capable of binding to the spike proteins of SARS-CoV-2 variants, including highly mutated strains like Omicron. These aptamers were identified through protein-based SELEX using spike proteins from three key variants (D614G-substituted Wuhan-Hu-1, Delta, and Omicron) and virus-based SELEX, known as viro-SELEX. Leveraging these universal aptamers, we created a highly sensitive lateral flow assay (LFA) and an ultra-sensitive molecular diagnostic platform that integrates a novel rapid PCR technique, enabling fast and reliable detection across all SARS-CoV-2 variants.

Keywords: LFA; PCR; SARS-CoV-2; SELEX; aptamer; diagnosis.

MeSH terms

  • Aptamers, Nucleotide* / chemistry
  • Aptamers, Nucleotide* / genetics
  • COVID-19* / diagnosis
  • COVID-19* / virology
  • Humans
  • Mutation
  • RNA, Viral / genetics
  • SARS-CoV-2* / genetics
  • SARS-CoV-2* / isolation & purification
  • SELEX Aptamer Technique* / methods
  • Sensitivity and Specificity
  • Spike Glycoprotein, Coronavirus* / genetics

Substances

  • Aptamers, Nucleotide
  • Spike Glycoprotein, Coronavirus
  • spike protein, SARS-CoV-2
  • RNA, Viral

Supplementary concepts

  • SARS-CoV-2 variants