Genome-wide identification and analysis of the NF-Y transcription factor family reveal its potential roles in tobacco (Nicotiana tabacum L.)

Plant Signal Behav. 2025 Dec;20(1):2451700. doi: 10.1080/15592324.2025.2451700. Epub 2025 Jan 16.

Abstract

Nuclear Factor Y (NF-Y) represents a group of transcription factors commonly present in higher eukaryotes, typically consisting of three subunits: NF-YA, NF-YB, and NF-YC. They play crucial roles in the embryonic development, photosynthesis, flowering, abiotic stress responses, and other essential processes in plants. To better understand the genome-wide NF-Y domain-containing proteins, the protein physicochemical properties, chromosomal localization, synteny, phylogenetic relationships, genomic structure, promoter cis-elements, and protein interaction network of NtNF-Ys in tobacco (Nicotiana tabacum L.) were systematically analyzed. In this study, we identified 58 NtNF-Ys in tobacco, respectively, and divided into three subfamilies corresponding to their phylogenetic relationships. Their tissue specificity and expression pattern analyses for leaf development, drought and saline-alkali stress, and ABA response were carried out using RNA-seq or qRT-PCR. These findings illuminate the role of NtNF-Ys in regulating plant leaf development, drought and saline-alkali stress tolerance, and ABA response. This study offers new insights to enhance our understanding of the roles of NtNF-Ys and identify potential genes involved in leaf development, as well as drought and saline-alkali stress tolerance of plants.

Keywords: ABA response; NF-Y gene family; Tobacco (Nicotiana tabacum L.); drought stress; leaf development; saline-alkali stress.

MeSH terms

  • CCAAT-Binding Factor* / genetics
  • CCAAT-Binding Factor* / metabolism
  • Gene Expression Regulation, Plant* / genetics
  • Genome, Plant / genetics
  • Nicotiana* / genetics
  • Nicotiana* / metabolism
  • Phylogeny*
  • Plant Proteins* / genetics
  • Plant Proteins* / metabolism
  • Stress, Physiological / genetics

Substances

  • Plant Proteins
  • CCAAT-Binding Factor
  • nuclear factor Y

Grants and funding

This work was supported by Science and Technological Project of China National Tobacco Corporation (110202103015), Science and Technological Project of China Tobacco Jiangsu Industrial Co., Ltd. (H202110), The Agricultural Science and Technology Innovation Program (ASTIP-TRIC02), and Fundamental Research Funds for Central Non-profit Scientific Institution (1610232024009).