Enabling next-generation engineered TCR-T therapies based on high-throughput TCR discovery from diagnostic tumor biopsies

Nat Commun. 2025 Jan 14;16(1):649. doi: 10.1038/s41467-024-55420-6.

Abstract

Adoptive cell therapy with tumor-infiltrating lymphocytes (TIL) can mediate tumor regression, including complete and durable responses, in a range of solid cancers, most notably in melanoma. However, its wider application and efficacy has been restricted by the limited accessibility, proliferative capacity and effector function of tumor-specific TIL. Here, we develop a platform for the efficient identification of tumor-specific TCR genes from diagnostic tumor biopsies, including core-needle biopsies frozen in a non-viable format, to enable engineered T cell therapy. Using a genetic screening approach that detects antigen-reactive TCRs with high sensitivity and specificity based on T cell activation, we show that high complexity TCR libraries can be efficiently screened against multiplexed antigen libraries to identify both HLA class I and II restricted TCRs. Through the identification of neoantigen-specific TCRs directly from melanoma as well as low tumor mutational burden microsatellite-stable colorectal carcinoma samples, we demonstrate the pan-cancer potential of this platform.

MeSH terms

  • Antigens, Neoplasm* / genetics
  • Antigens, Neoplasm* / immunology
  • Antigens, Neoplasm* / metabolism
  • Biopsy
  • Colorectal Neoplasms / genetics
  • Colorectal Neoplasms / immunology
  • Colorectal Neoplasms / pathology
  • Colorectal Neoplasms / therapy
  • Humans
  • Immunotherapy, Adoptive / methods
  • Lymphocyte Activation / genetics
  • Lymphocyte Activation / immunology
  • Lymphocytes, Tumor-Infiltrating* / immunology
  • Melanoma* / genetics
  • Melanoma* / immunology
  • Melanoma* / pathology
  • Melanoma* / therapy
  • Receptors, Antigen, T-Cell* / genetics
  • Receptors, Antigen, T-Cell* / immunology
  • Receptors, Antigen, T-Cell* / metabolism
  • T-Lymphocytes / immunology
  • T-Lymphocytes / metabolism

Substances

  • Receptors, Antigen, T-Cell
  • Antigens, Neoplasm