Soil polluted system shapes endophytic fungi communities associated with Arundo donax: a field experiment

PeerJ. 2025 Jan 10:13:e18789. doi: 10.7717/peerj.18789. eCollection 2025.

Abstract

With the expansion of the mining industry, environmental pollution from microelements (MP) and red mud (RM) has become a pressing issue. While bioremediation offers a cost-effective and sustainable solution, plant growth in these polluted environments remains difficult. Arundo donax is one of the few plants capable of surviving in RM-affected soils. To identify endophytic fungi that support A. donax in different contaminated environments and to inform future research combining mycorrhizal techniques with hyperaccumulator plants, we conducted a field experiment. The study compared endophytic fungal communities in A. donax grown in uncontaminated, MP soils contaminated with cadmium (Cd), arsenic (As), and lead (Pb), and RM-contaminated soils. Our findings showed that soil nutrient profiles differed by contamination type, with Cd concentrations in MP soils exceeding national pollution standards (GB 15168-2018) and RM soils characterized by high aluminum (Al), iron (Fe), and alkalinity. There were significant differences in the endophytic fungal community structures across the three soil types (p < 0.001). Co-occurrence network analysis revealed that endophytic fungi in MP soils exhibited competitive niche dynamics, whereas fungi in RM soils tended to share niches. Notably, Pleosporales sp., which accounted for 18% of the relative abundance in RM soils, was identified as a dominant and beneficial endophyte, making it a promising candidate for future bioremediation efforts. This study provides valuable insights into the role of endophytic fungi in phytoremediation and highlights their potential as resources for improving plant-microbe interactions in contaminated environments.

Keywords: Contaminated soil; High throughput sequencing; Microbial network; Phytoremediation; Red mud soil.

MeSH terms

  • Biodegradation, Environmental
  • Endophytes*
  • Fungi / isolation & purification
  • Fungi / metabolism
  • Poaceae / microbiology
  • Soil / chemistry
  • Soil Microbiology*
  • Soil Pollutants* / analysis

Substances

  • Soil Pollutants
  • Soil

Grants and funding

This work is supported by the National Natural Science Foundation of China (32460312), the Basic research fund of Guangxi Academy of Sciences (CQZ-D-1904), the Fundamental Research Fund of the Guangxi Institute of Botany, China (Guizhiye, 24010), the Key R&D Program of Guangxi, China (Guike AB22035038), the Light of West China Program of the Chinese Academic of Sciences ([2019]90), and the Guangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain (No. 22-035-26). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.