Population genomics of Plasmodium ovale species in sub-Saharan Africa

Nat Commun. 2024 Nov 27;15(1):10297. doi: 10.1038/s41467-024-54667-3.

Abstract

Plasmodium ovale curtisi (Poc) and Plasmodium ovale wallikeri (Pow) are relapsing malaria parasites endemic to Africa and Asia that were previously thought to represent a single species. Amid increasing detection of ovale malaria in sub-Saharan Africa, we present a population genomic study of both species across the continent. We conducted whole-genome sequencing of 25 isolates from Central and East Africa and analyzed them alongside 20 previously published African genomes. Isolates are predominantly monoclonal (43/45), with their genetic similarity aligning with geography. Pow shows lower average nucleotide diversity (1.8×10-4) across the genome compared to Poc (3.0×10-4) (p < 0.0001). Signatures of selective sweeps involving the dihydrofolate reductase gene have been found in both species, as are signs of balancing selection at the merozoite surface protein 1 gene. Differences in the nucleotide diversity of Poc and Pow may reflect unique demographic history, even as similar selective forces facilitate their resilience to malaria control interventions.

MeSH terms

  • Africa South of the Sahara / epidemiology
  • Genetic Variation
  • Genome, Protozoan* / genetics
  • Genomics / methods
  • Humans
  • Malaria* / epidemiology
  • Malaria* / parasitology
  • Merozoite Surface Protein 1 / genetics
  • Metagenomics
  • Phylogeny
  • Plasmodium ovale* / classification
  • Plasmodium ovale* / genetics
  • Plasmodium ovale* / isolation & purification
  • Tetrahydrofolate Dehydrogenase / genetics
  • Whole Genome Sequencing

Substances

  • Tetrahydrofolate Dehydrogenase
  • Merozoite Surface Protein 1