Genomic Identification and Expression Analysis of Regulator of Chromosome Condensation 1-Domain Protein Family in Maize

Int J Mol Sci. 2024 Oct 24;25(21):11437. doi: 10.3390/ijms252111437.

Abstract

Abiotic stress affects the growth and development of maize (Zea mays). The regulator of chromosome condensation 1 (RCC1)-containing proteins (RCPs) plays crucial roles in plant growth and development and response to abiotic stresses. However, a comprehensive analysis of the maize RCP family has not been reported in detail. This study presents a systematic bioinformatics analysis of the ZmRCP family, identifying a total of 30 members distributed across nine chromosomes. The physicochemical properties and cis-acting elements in the promoters of ZmRCP members are predicted. The results of subcellular localization showed that ZmRCP3 and ZmRCP10 are targeted to mitochondria and ZmRCP2 is localized in the nucleus. A heatmap of expression levels among family members under abiotic stress conditions revealed varying degrees of induced expression, and the expression levels of 10 ZmRCP members were quantified using RT-qPCR under abiotic stress and plant hormone treatments. The results showed that ZmRCP members exhibit induced or inhibited responses to these abiotic stresses and plant hormones. These results contribute to a better understanding of the evolutionary history and potential role of the ZmRCP family in mediating responses to abiotic stress in maize.

Keywords: RCC1-containing protein; abiotic stress; bioinformatic analysis; maize (Zea mays).

MeSH terms

  • Chromosomes, Plant / genetics
  • Gene Expression Profiling
  • Gene Expression Regulation, Plant*
  • Genomics / methods
  • Multigene Family
  • Phylogeny
  • Plant Proteins* / genetics
  • Plant Proteins* / metabolism
  • Promoter Regions, Genetic
  • Stress, Physiological* / genetics
  • Zea mays* / genetics
  • Zea mays* / metabolism

Substances

  • Plant Proteins