SETDB1 targeting SESN2 regulates mitochondrial damage and oxidative stress in renal ischemia-reperfusion injury

BMC Biol. 2024 Oct 23;22(1):246. doi: 10.1186/s12915-024-02048-z.

Abstract

Background: The role of histone methyltransferase SETDB1 in renal ischemia-reperfusion (I/R) injury has not been explored yet. This study aims to investigate the potential mechanism of SETDB1 in regulating renal I/R injury and its impact on mitochondrial damage and oxidative stress.

Methods: The in vivo model of renal I/R in mice and the in vitro model of hypoxia/reoxygenation (H/R) in human renal tubular epithelial cells (HK-2) were constructed to detect the expression of SETDB1. Next, the specific inhibitor (R,R)-59 and knockdown viruses were used to inhibit SETDB1 and verify its effects on mitochondrial damage and oxidative stress. Chromatin immunoprecipitation (ChIP) and coimmunoprecipitation (CoIP) were implemented to explore the in-depth mechanism of SETDB1 regulating renal I/R injury.

Results: The study found that SETDB1 had a regulatory role in mitochondrial damage and oxidative stress during renal I/R injury. Notably, SESN2 was identified as a target of SETDB1, and its expression was under the influence of SETDB1. Besides, SESN2 mediated the regulation of SETDB1 on renal I/R injury. Through deeper mechanistic studies, we uncovered that SETDB1 collaborates with heterochromatin HP1β, facilitating the labeling of H3K9me3 on the SESN2 promoter and impeding SESN2 expression.

Conclusions: The SETDB1/HP1β-SESN2 axis emerges as a potential therapeutic strategy for mitigating renal I/R injury.

Keywords: Mitochondrial damage; Oxidative stress; Renal ischemia–reperfusion injury; SESN2; SETDB1.

MeSH terms

  • Animals
  • Chromobox Protein Homolog 5 / metabolism
  • Gene Expression
  • Histone-Lysine N-Methyltransferase* / antagonists & inhibitors
  • Histone-Lysine N-Methyltransferase* / metabolism
  • Humans
  • Kidney* / injuries
  • Kidney* / pathology
  • Mice
  • Mitochondria / metabolism
  • Mitochondria / pathology
  • Oxidative Stress
  • Promoter Regions, Genetic
  • Reperfusion Injury* / metabolism
  • Reperfusion Injury* / pathology
  • Sestrins / metabolism

Substances

  • SETDB1 protein, human
  • SETDB1 protein, mouse
  • Histone-Lysine N-Methyltransferase
  • SESN2 protein, human
  • Sestrins
  • Sesn2 protein, mouse
  • CBX1 protein, human
  • Cbx1 protein, mouse
  • Chromobox Protein Homolog 5