Pathophysiological significance of the p.E31G variant in RAC1 responsible for a neurodevelopmental disorder with microcephaly

Biochim Biophys Acta Mol Basis Dis. 2025 Jan;1871(1):167520. doi: 10.1016/j.bbadis.2024.167520. Epub 2024 Sep 20.

Abstract

RAC1 encodes a Rho family small GTPase that regulates actin cytoskeletal reorganization and intracellular signaling pathways. Pathogenic RAC1 variants lead to a neurodevelopmental disorder with diverse phenotypic manifestations, including abnormalities in brain size and facial dysmorphism. However, the underlying pathophysiological mechanisms have yet to be elucidated. Here, we present the case of a school-aged male who exhibited global developmental delay, intellectual disability, and acquired microcephaly. Through whole exome sequencing, we identified a novel de novo variant in RAC1, (NM_006908.5): c.92 A > G,p.(E31G). We then examined the pathophysiological significance of the p.E31G variant by focusing on brain development. Biochemical analyses revealed that the recombinant RAC1-E31G had no discernible impact on the intrinsic GDP/GTP exchange activity. However, it exhibited a slight inhibitory effect on GTP hydrolysis. Conversely, it demonstrated a typical response to both a guanine-nucleotide exchange factor and a GTPase-activating protein. In transient expression analyses using COS7 cells, RAC1-E31G exhibited minimal interaction with the downstream effector PAK1, even in its GTP-bound state. Additionally, overexpression of RAC1-E31G was observed to exert a weak inhibitory effect on the differentiation of primary cultured hippocampal neurons. Moreover, in vivo studies employing in utero electroporation revealed that acute expression of RAC1-E31G resulted in impairments in axonal elongation and dendritic arborization in the young adult stage. These findings suggest that the p.E31G variant functions as a dominant-negative version in the PAK1-mediated signaling pathway and is responsible for the clinical features observed in the patient under investigation, namely microcephaly and intellectual disability.

Keywords: Axon extension; Brain development; Dendritic arborization; RAC1; Small GTPase.

Publication types

  • Case Reports

MeSH terms

  • Animals
  • COS Cells
  • Child
  • Chlorocebus aethiops
  • Humans
  • Intellectual Disability / genetics
  • Intellectual Disability / metabolism
  • Intellectual Disability / pathology
  • Male
  • Microcephaly* / genetics
  • Microcephaly* / metabolism
  • Microcephaly* / pathology
  • Neurodevelopmental Disorders* / genetics
  • Neurodevelopmental Disorders* / metabolism
  • Neurodevelopmental Disorders* / pathology
  • p21-Activated Kinases / genetics
  • p21-Activated Kinases / metabolism
  • rac1 GTP-Binding Protein* / genetics
  • rac1 GTP-Binding Protein* / metabolism

Substances

  • rac1 GTP-Binding Protein
  • RAC1 protein, human
  • p21-Activated Kinases